Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_J22
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.6  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   4.3  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    26   6.3  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   8.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   8.3  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -3

Query: 506 PQXPNPXPXGGGGXFXPXKXXPPPPGPGXXK 414
           P  P P P   G  F P    PPPP PG  K
Sbjct: 6   PGNPPPPPPPPG--FEPPSQPPPPPPPGYVK 34



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +2

Query: 803 PPGNPPRXPXPXPXPXPXYRXPXSP 877
           PPGNPP  P P     P    P  P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/60 (28%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
 Frame = +2

Query: 707 PPPPXKSXPKNXXXQVX-GGPTPXGXFXXPRXXPPGNPPRXPXPXPXPXPXYRXPXSPFF 883
           PPPP    P      +    P P      P   PPG     P P P P P      S ++
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYY 793



 Score = 23.4 bits (48), Expect(2) = 2.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 448 PPPPPPDP 425
           PPPPPP P
Sbjct: 776 PPPPPPPP 783



 Score = 22.2 bits (45), Expect(2) = 2.6
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -1

Query: 490 PXPXGGXXXLXXXXPPPPPP 431
           P P      +    PPPPPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPP 767


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 22.6 bits (46), Expect(2) = 4.3
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -1

Query: 445 PPPPPDPXXXKEXXGG 398
           PPPPP P       GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960



 Score = 22.2 bits (45), Expect(2) = 4.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 448 PPPPPPDP 425
           PPPPPP P
Sbjct: 907 PPPPPPLP 914


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 821 RXPXPXPXPXPXYRXPXSPFFP 886
           R P P P P P Y  P  P  P
Sbjct: 355 RPPPPPPMPAPIYNVPNVPTVP 376


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -1

Query: 496 QTPXPXGGXXXLXXXXPPPPPPDP 425
           +T  P  G        PPPPPP P
Sbjct: 291 KTQAPSSGDSANGGLPPPPPPPPP 314


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/59 (25%), Positives = 16/59 (27%)
 Frame = +2

Query: 710 PPPXKSXPKNXXXQVXGGPTPXGXFXXPRXXPPGNPPRXPXPXPXPXPXYRXPXSPFFP 886
           PPP    P     Q      P   +   R   P  PP        P P    P  P  P
Sbjct: 189 PPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPPPPTLP 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.151    0.516 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,980,782
Number of Sequences: 5004
Number of extensions: 26131
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)