Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_J14
         (884 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0415 - 13661745-13664240,13664376-13664401,13665018-136650...    32   0.70 
08_02_1579 + 27997714-27998199,27998718-27998789,27999073-279991...    31   1.2  
03_05_0373 + 23581812-23583293                                         30   2.1  
09_03_0165 + 12936028-12936398,12936807-12936810                       29   6.6  
06_01_0008 + 141405-142421                                             28   8.7  
01_01_0933 - 7368672-7368785,7368860-7368895,7369581-7369715,736...    28   8.7  

>05_03_0415 -
           13661745-13664240,13664376-13664401,13665018-13665035,
           13665914-13666181,13666531-13666598,13667102-13667243
          Length = 1005

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 21/53 (39%), Positives = 28/53 (52%)
 Frame = -2

Query: 427 PCARCSASTVPKPPWPCRSRLRALPWRLLAKALSCCSTDSEPSXQALLKSCAS 269
           P  R SA T+    WP    L A+ +R L  AL+CC + S PS    L++C S
Sbjct: 99  PGLRASAPTLR---WPFPRLLDAIAFRPLPCALACCGS-SAPSVVRHLRACGS 147


>08_02_1579 +
           27997714-27998199,27998718-27998789,27999073-27999120,
           27999203-27999357,27999477-27999671,27999743-27999854,
           27999955-28000024,28000110-28000168,28000251-28000374,
           28000465-28000535,28001053-28001154,28001242-28001322,
           28001504-28001662,28001757-28001807
          Length = 594

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -2

Query: 253 ELNCCSKVLWNCLGVVFDVLEEVGSVASHHRSLGQSDAGEENYELGGHDVLSRDLSAEEM 74
           E N C+  L      V D + E G VA    ++G SDA         + + SRDL A+ +
Sbjct: 82  EGNTCNMHLLRLAEAVRDGVREAGMVAFRFNTVGVSDAISMGTRGMCYSLQSRDLIADSI 141

Query: 73  RT--GLQH 56
            T  G QH
Sbjct: 142 ETVMGAQH 149


>03_05_0373 + 23581812-23583293
          Length = 493

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = -2

Query: 460 DVQGGPCGAPRPCARCSASTVPKPPW 383
           D  GG   A    +RCSAST PK PW
Sbjct: 53  DGAGGYGSAASSPSRCSASTPPKSPW 78


>09_03_0165 + 12936028-12936398,12936807-12936810
          Length = 124

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = +2

Query: 482 REKLQAAVQNTVQESQQVSEEGVLERA--GD**ETGAQDQGRLRRLREEHPGGDQEDPGG 655
           R K+++  +  VQ     S+    +R   G   E G   Q RL R  EE  GG     GG
Sbjct: 37  RIKIKSVREGDVQSPSPGSQGAPAQRLDQGQVGEGGRHAQCRLHRQEEESRGGSSMKGGG 96

Query: 656 RQ 661
           RQ
Sbjct: 97  RQ 98


>06_01_0008 + 141405-142421
          Length = 338

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = -2

Query: 439 GAPRPCARCSASTVPKPPWPCR---SRLR-ALPWRLLAKALSCCSTDSEPSXQ 293
           G+ RP A  SAS  P P  P R    R R +LPW L A A    +  S P+ Q
Sbjct: 259 GSHRPAAPASASASPSPAPPPRLAERRFRISLPWPLRA-AFGGQAESSNPTNQ 310


>01_01_0933 -
           7368672-7368785,7368860-7368895,7369581-7369715,
           7369825-7369989,7370060-7370140,7370316-7370391,
           7370479-7370612,7370706-7370798,7371860-7372188,
           7372290-7372350,7372407-7372778
          Length = 531

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = -2

Query: 445 PCGAPRPCARCSASTVPKPPWPCRSRLRALPWRLLAKALSC 323
           PC  P P  R  ++T  + PW    R R + W  L     C
Sbjct: 26  PCTTPAPRMRSLSATTTRRPWRTGWRGRPMRWASLVVMKLC 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,576,577
Number of Sequences: 37544
Number of extensions: 284493
Number of successful extensions: 1281
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1280
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)