Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_J13
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    67   3e-12
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    66   8e-12
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    61   2e-10
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    27   3.6  

>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 67.3 bits (157), Expect = 3e-12
 Identities = 31/65 (47%), Positives = 45/65 (69%)
 Frame = -1

Query: 531 VSKAELAXVYSAXILVDDDVAVTGEKISTXLKAAAVDVEPYWPGXFAKALEGINVRDXIT 352
           +S +ELA  YSA IL D+ + +T +K+ +  KAA VDVEP W   FAKALEG ++++ + 
Sbjct: 1   MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60

Query: 351 NMGFG 337
           N+G G
Sbjct: 61  NIGSG 65


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 65.7 bits (153), Expect = 8e-12
 Identities = 30/63 (47%), Positives = 44/63 (69%)
 Frame = -1

Query: 531 VSKAELAXVYSAXILVDDDVAVTGEKISTXLKAAAVDVEPYWPGXFAKALEGINVRDXIT 352
           +S +ELA  YSA IL D+ + +T +K+ +  KAA VDVEP W   FAKALEG ++++ + 
Sbjct: 1   MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60

Query: 351 NMG 343
           N+G
Sbjct: 61  NIG 63


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 27/63 (42%), Positives = 43/63 (68%)
 Frame = -1

Query: 531 VSKAELAXVYSAXILVDDDVAVTGEKISTXLKAAAVDVEPYWPGXFAKALEGINVRDXIT 352
           +S +ELA  Y+A IL D+ + +T +K+ +  KA  V+VEP W   FAKALEG ++++ + 
Sbjct: 1   MSASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLL 60

Query: 351 NMG 343
           N+G
Sbjct: 61  NIG 63


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -2

Query: 695 VSERGXGRAPNTQTASPRALADSLMQKKLCCQ 600
           +  +G GR P ++ A  +A+  S +++ LCC+
Sbjct: 141 IQVKGAGRTPYSRFADGKAVLRSSIREYLCCE 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,145,837
Number of Sequences: 5004
Number of extensions: 28764
Number of successful extensions: 48
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)