Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_J09
         (928 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888     94   1e-19
05_04_0048 - 17493775-17494431,17494506-17494801,17494851-174949...    31   1.7  
03_01_0515 - 3864796-3865425                                           29   4.0  
09_06_0342 + 22410674-22411060,22412219-22412299,22412376-224125...    29   6.9  
02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023     29   6.9  

>11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888
          Length = 433

 Score = 94.3 bits (224), Expect = 1e-19
 Identities = 50/117 (42%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
 Frame = +1

Query: 277 MPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIETLIELGAEVQW-SSSNIYSTQDE 453
           MPGLMACR ++ P++  KGARI+GSLH T+Q AVLIETL  LG         ++      
Sbjct: 1   MPGLMACRAEFGPSQPFKGARISGSLHRTIQAAVLIETLTALGRRGPLVLLQHLLHAGPR 60

Query: 454 AAAALVAVGIPIYAWKGETDDXYIWCIEQTLIFPDGKPLNMILDDGGDXXXLXHTKV 624
                      ++AWKGET + Y WC E+ L +  G   ++I+DDGGD   L H  V
Sbjct: 61  RRPPSPRDSAAVFAWKGETLEEYWWCTERCLDWGVGAGPDLIVDDGGDATLLIHEGV 117


>05_04_0048 -
           17493775-17494431,17494506-17494801,17494851-17494958,
           17495463-17495544,17495561-17495740
          Length = 440

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
 Frame = +1

Query: 250 KEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTV------QTAVLIETLIELGAE 411
           KE+M    E PG++  R     + +++   IA  LH  V      QTA L+  +  L  +
Sbjct: 197 KELMEGVSE-PGVLQSRLSKITSFLVQATSIAAGLHDEVPLQIRGQTAALVTQISGLEQQ 255

Query: 412 VQWSSSNIYSTQDE 453
           V+  S  + ST+DE
Sbjct: 256 VEELSKKLCSTEDE 269


>03_01_0515 - 3864796-3865425
          Length = 209

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
 Frame = -2

Query: 531 TPDILVISFSLPGIDGYSYGNQC-SCGLVLCTINVTAGPLYLCSQFY*SLNKNRCLYCHV 355
           +P   V  +++  +  ++  + C + G  L  +NV +G    CS        N  L  +V
Sbjct: 123 SPVTNVNDYTIQQVGKFAVQSYCLNTGAKLVYVNVVSGQTQPCS----GGGSNYQLVINV 178

Query: 354 *AAGYSGTFEYFSWSIFPTTCHKAWHF 274
            A   +  +  F W I  TT  K W F
Sbjct: 179 AAGVRTAQYSVFVWGILGTTTWKLWSF 205


>09_06_0342 +
           22410674-22411060,22412219-22412299,22412376-22412579,
           22412765-22412959,22413064-22413228,22413501-22413761,
           22413908-22414126,22414285-22414504,22414591-22414613,
           22414728-22414766
          Length = 597

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 21/73 (28%), Positives = 35/73 (47%)
 Frame = +1

Query: 202 KPPYKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVL 381
           +PP  +  ++    GR+     EKE   L   +R+   A+IL G R  G+ ++ V+ A +
Sbjct: 33  RPP--LQQQQQVGLGRRGRAREEKERTKLRERQRRAITARILAGLRRHGNYNLRVR-ADI 89

Query: 382 IETLIELGAEVQW 420
            E +  L  E  W
Sbjct: 90  NEVIAALAREAGW 102


>02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023
          Length = 432

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 567 RLSIREDQCLFNTPDILVISFSLPGIDGYSYGNQCSC 457
           R SI   +C  N  D LV S  L  + GYS+ +  SC
Sbjct: 392 RASISVARCSLNRHDALVWSTELQELTGYSFEDLVSC 428


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,825,687
Number of Sequences: 37544
Number of extensions: 367526
Number of successful extensions: 723
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)