Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_J01
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr 1...    28   1.5  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    27   4.6  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    26   8.1  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    26   8.1  
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    26   8.1  
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    26   8.1  

>SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 95

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 432 SSEGVLVDDQTVQDLGRQTNIPHCNFQMHCC 340
           + EG LV D+   ++G+    P C F   CC
Sbjct: 64  TEEGFLVYDEEELNIGQGGGTPDCPFDCQCC 94


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 740  RMMVDLIRKRFHXNHVSCIVSXCDVHITSKSHARLAL 850
            +M VD++R     + ++  +    VH+TS S+ RL L
Sbjct: 1127 KMNVDILRDEIDKSTLNSFLESAIVHVTSFSNLRLCL 1163


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 674 SKRVQFKSTNTTVLRLYFVQYFSRNVFQTVLCKST 570
           +KR +FKS+    LR +  +   R+V+QT L  +T
Sbjct: 486 AKRKEFKSSVLYSLRCFTKRSHLRSVYQTTLLSNT 520


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 673 ECLVLHYLSKNHAK-NLRKWVSKSNDGGSNQKE 768
           E LVL   S N  K N+R+W SK  +  ++QK+
Sbjct: 112 EVLVLRLDSPNELKENIREWSSKFMNSKASQKQ 144


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 706 DFLKGNAKRDIPKES-NSRAQTPQYSGSILCNISL 605
           +++   A   IP+   N R+    YSGS+L NISL
Sbjct: 259 NYITSTAFESIPESGHNVRSLEITYSGSLLTNISL 293


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 219 SIMSIPFYKMNSREEYEMNED 281
           SI S P  K  SRE++E NED
Sbjct: 366 SIRSSPKSKKRSREDFEENED 386


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,393,659
Number of Sequences: 5004
Number of extensions: 70593
Number of successful extensions: 186
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)