Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP22_F_I17
(984 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical... 33 0.24
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 33 0.24
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 32 0.54
U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter... 31 1.7
U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter... 31 1.7
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.7
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.7
L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein. 31 1.7
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.7
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 30 2.2
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 30 2.2
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.9
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.9
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 2.9
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 2.9
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 2.9
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 5.1
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 29 5.1
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 29 6.7
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 6.7
Z78013-8|CAN99686.1| 373|Caenorhabditis elegans Hypothetical pr... 28 8.9
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 28 8.9
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 28 8.9
AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical... 28 8.9
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 28 8.9
>AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical
protein Y116A8C.35 protein.
Length = 285
Score = 33.5 bits (73), Expect = 0.24
Identities = 21/61 (34%), Positives = 22/61 (36%)
Frame = +3
Query: 423 RSXSXGGGGPXRXXMXXAXGAXXRXGVXXXRXRXGXXXGGGGSXSXXGGXXGXPXEXGGK 602
R S GGGG + G G R R G GGGG GG G GG
Sbjct: 212 RGGSGGGGGGGGGGGYGSGGGWGGGGGGRDRDRGGWGGGGGGRGYGGGGGGGGYGYGGGG 271
Query: 603 G 605
G
Sbjct: 272 G 272
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 33.5 bits (73), Expect = 0.24
Identities = 18/56 (32%), Positives = 19/56 (33%)
Frame = -3
Query: 604 PFPPXSXGXPXXPPXXEXXPPPPXXXPXRXRXXXTPXRXXAPXAXXXXXRXGPPPP 437
P PP G P PP PPPP P P + P PPPP
Sbjct: 707 PPPPGIPGYPPAPPPPGVGPPPPQGIPP---MGFDPNKPPPPMFQQGFNAGAPPPP 759
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical
protein C56A3.1 protein.
Length = 393
Score = 32.3 bits (70), Expect = 0.54
Identities = 24/88 (27%), Positives = 26/88 (29%)
Frame = +3
Query: 438 GGGGPXRXXMXXAXGAXXRXGVXXXRXRXGXXXGGGGSXSXXGGXXGXPXEXGGKGXYXP 617
GGGG G G G GGGG GG G GG G +
Sbjct: 86 GGGGCGGGGCGGGGGGCGGGGGCGGGGGGGCGGGGGGGCGGGGGGGGGGYASGGSGGF-- 143
Query: 618 LTERAX*XLXPXKGPXSPAXXHXHRPXG 701
+ GP PA H P G
Sbjct: 144 ASAPVSLPAPSYGGPPPPAPSFSHAPSG 171
>U50191-2|AAK31556.2| 335|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform a protein.
Length = 335
Score = 30.7 bits (66), Expect = 1.7
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +2
Query: 440 RGWAXAXGXAXXPXGXGPXGCXXGXXPPGXXG 535
RGW G + P GP G G PPG G
Sbjct: 254 RGWPGVSGESGEPGYPGPEGPMGGQGPPGEPG 285
>U50191-1|AAO38600.2| 372|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 10, isoform b protein.
Length = 372
Score = 30.7 bits (66), Expect = 1.7
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +2
Query: 440 RGWAXAXGXAXXPXGXGPXGCXXGXXPPGXXG 535
RGW G + P GP G G PPG G
Sbjct: 291 RGWPGVSGESGEPGYPGPEGPMGGQGPPGEPG 322
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.7 bits (66), Expect = 1.7
Identities = 18/51 (35%), Positives = 19/51 (37%)
Frame = -1
Query: 612 GIXPSPPXXXXXPXXRRXVRXXPXPPPXXPGGXXPXXHPXGPXPXGXXAXP 460
G P PP P + P PPP PGG P P P P G P
Sbjct: 741 GPPPPPPPGGLPP-----ISGGPPPPPPPPGGCPPP--PPPPPPGGFKGGP 784
Score = 30.7 bits (66), Expect = 1.7
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 598 PPXSXGXPXXPPXXEXXPPPPXXXP 524
PP S G P PP PPPP P
Sbjct: 752 PPISGGPPPPPPPPGGCPPPPPPPP 776
Score = 30.3 bits (65), Expect = 2.2
Identities = 18/60 (30%), Positives = 19/60 (31%)
Frame = -3
Query: 583 GXPXXPPXXEXXPPPPXXXPXRXRXXXTPXRXXAPXAXXXXXRXGPPPPXEXDLPXLXGG 404
G PP PPPP P P P PPPP LP + GG
Sbjct: 702 GSSALPPITGGPPPPPGLPPITGGPPPPP----PPGGLPPITGGPPPPPPPGGLPPISGG 757
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.7 bits (66), Expect = 1.7
Identities = 18/51 (35%), Positives = 19/51 (37%)
Frame = -1
Query: 612 GIXPSPPXXXXXPXXRRXVRXXPXPPPXXPGGXXPXXHPXGPXPXGXXAXP 460
G P PP P + P PPP PGG P P P P G P
Sbjct: 741 GPPPPPPPGGLPP-----ISGGPPPPPPPPGGCPPP--PPPPPPGGFKGGP 784
Score = 30.7 bits (66), Expect = 1.7
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 598 PPXSXGXPXXPPXXEXXPPPPXXXP 524
PP S G P PP PPPP P
Sbjct: 752 PPISGGPPPPPPPPGGCPPPPPPPP 776
Score = 30.3 bits (65), Expect = 2.2
Identities = 18/60 (30%), Positives = 19/60 (31%)
Frame = -3
Query: 583 GXPXXPPXXEXXPPPPXXXPXRXRXXXTPXRXXAPXAXXXXXRXGPPPPXEXDLPXLXGG 404
G PP PPPP P P P PPPP LP + GG
Sbjct: 702 GSSALPPITGGPPPPPGLPPITGGPPPPP----PPGGLPPITGGPPPPPPPGGLPPISGG 757
>L12692-1|AAA17395.2| 356|Caenorhabditis elegans collagen protein.
Length = 356
Score = 30.7 bits (66), Expect = 1.7
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +2
Query: 440 RGWAXAXGXAXXPXGXGPXGCXXGXXPPGXXG 535
RGW G + P GP G G PPG G
Sbjct: 275 RGWPGVSGESGEPGYPGPEGPMGGQGPPGEPG 306
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.7 bits (66), Expect = 1.7
Identities = 18/51 (35%), Positives = 19/51 (37%)
Frame = -1
Query: 612 GIXPSPPXXXXXPXXRRXVRXXPXPPPXXPGGXXPXXHPXGPXPXGXXAXP 460
G P PP P + P PPP PGG P P P P G P
Sbjct: 324 GPPPPPPPGGLPP-----ISGGPPPPPPPPGGCPPP--PPPPPPGGFKGGP 367
Score = 30.7 bits (66), Expect = 1.7
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -3
Query: 598 PPXSXGXPXXPPXXEXXPPPPXXXP 524
PP S G P PP PPPP P
Sbjct: 335 PPISGGPPPPPPPPGGCPPPPPPPP 359
Score = 30.3 bits (65), Expect = 2.2
Identities = 18/60 (30%), Positives = 19/60 (31%)
Frame = -3
Query: 583 GXPXXPPXXEXXPPPPXXXPXRXRXXXTPXRXXAPXAXXXXXRXGPPPPXEXDLPXLXGG 404
G PP PPPP P P P PPPP LP + GG
Sbjct: 285 GSSALPPITGGPPPPPGLPPITGGPPPPP----PPGGLPPITGGPPPPPPPGGLPPISGG 340
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 30.3 bits (65), Expect = 2.2
Identities = 18/56 (32%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Frame = -3
Query: 601 FPPXSXGX-PXXPPXXEXXPPPPXXXPXRXRXXXTPXRXXAPXAXXXXXRXGPPPP 437
FPP G P PP PP P P R P R GP PP
Sbjct: 296 FPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMFRGGPYPP 351
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 30.3 bits (65), Expect = 2.2
Identities = 18/56 (32%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Frame = -3
Query: 601 FPPXSXGX-PXXPPXXEXXPPPPXXXPXRXRXXXTPXRXXAPXAXXXXXRXGPPPP 437
FPP G P PP PP P P R P R GP PP
Sbjct: 296 FPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMFRGGPYPP 351
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.9 bits (64), Expect = 2.9
Identities = 18/60 (30%), Positives = 19/60 (31%)
Frame = -3
Query: 616 GWYXPFPPXSXGXPXXPPXXEXXPPPPXXXPXRXRXXXTPXRXXAPXAXXXXXRXGPPPP 437
G + P PP G PP PPPP P R P PPPP
Sbjct: 294 GMWPPPPPPPPGRTPGPPGMPGMPPPP--PPSRFGPPGMGGMPPPPPPGMRYPGGMPPPP 351
Score = 29.1 bits (62), Expect = 5.1
Identities = 19/76 (25%), Positives = 21/76 (27%), Gaps = 5/76 (6%)
Frame = -3
Query: 619 RGWYXPFPPXSXGXPXXPPXXEXXP-----PPPXXXPXRXRXXXTPXRXXAPXAXXXXXR 455
+G Y P PP PP P PPP P P
Sbjct: 257 QGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGM 316
Query: 454 XGPPPPXEXDLPXLXG 407
PPPP P + G
Sbjct: 317 PPPPPPSRFGPPGMGG 332
Score = 28.7 bits (61), Expect = 6.7
Identities = 26/94 (27%), Positives = 26/94 (27%), Gaps = 5/94 (5%)
Frame = -1
Query: 708 MPVPGXGAXGXXPGXAGPFXXXXXIXPFR*GXGIXPSPPXXXXXPXXRRXVRXXPX---- 541
MP P G P P P G P PP P R P
Sbjct: 273 MPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGG 332
Query: 540 -PPPXXPGGXXPXXHPXGPXPXGXXAXPXALAHP 442
PPP PG P P P P A P P
Sbjct: 333 MPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPP 366
Score = 28.3 bits (60), Expect = 8.9
Identities = 18/59 (30%), Positives = 18/59 (30%), Gaps = 5/59 (8%)
Frame = -3
Query: 598 PPXSXGXPXXPPXXEXXP-----PPPXXXPXRXRXXXTPXRXXAPXAXXXXXRXGPPPP 437
PP G P PP P PPP P P P A PPPP
Sbjct: 327 PPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPP 385
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.9 bits (64), Expect = 2.9
Identities = 18/60 (30%), Positives = 19/60 (31%)
Frame = -3
Query: 616 GWYXPFPPXSXGXPXXPPXXEXXPPPPXXXPXRXRXXXTPXRXXAPXAXXXXXRXGPPPP 437
G + P PP G PP PPPP P R P PPPP
Sbjct: 304 GMWPPPPPPPPGRTPGPPGMPGMPPPP--PPSRFGPPGMGGMPPPPPPGMRYPGGMPPPP 361
Score = 29.1 bits (62), Expect = 5.1
Identities = 19/76 (25%), Positives = 21/76 (27%), Gaps = 5/76 (6%)
Frame = -3
Query: 619 RGWYXPFPPXSXGXPXXPPXXEXXP-----PPPXXXPXRXRXXXTPXRXXAPXAXXXXXR 455
+G Y P PP PP P PPP P P
Sbjct: 267 QGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGM 326
Query: 454 XGPPPPXEXDLPXLXG 407
PPPP P + G
Sbjct: 327 PPPPPPSRFGPPGMGG 342
Score = 28.7 bits (61), Expect = 6.7
Identities = 26/94 (27%), Positives = 26/94 (27%), Gaps = 5/94 (5%)
Frame = -1
Query: 708 MPVPGXGAXGXXPGXAGPFXXXXXIXPFR*GXGIXPSPPXXXXXPXXRRXVRXXPX---- 541
MP P G P P P G P PP P R P
Sbjct: 283 MPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGG 342
Query: 540 -PPPXXPGGXXPXXHPXGPXPXGXXAXPXALAHP 442
PPP PG P P P P A P P
Sbjct: 343 MPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPP 376
Score = 28.3 bits (60), Expect = 8.9
Identities = 18/59 (30%), Positives = 18/59 (30%), Gaps = 5/59 (8%)
Frame = -3
Query: 598 PPXSXGXPXXPPXXEXXP-----PPPXXXPXRXRXXXTPXRXXAPXAXXXXXRXGPPPP 437
PP G P PP P PPP P P P A PPPP
Sbjct: 337 PPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMIPPPP 395
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.9 bits (64), Expect = 2.9
Identities = 19/66 (28%), Positives = 21/66 (31%)
Frame = -3
Query: 604 PFPPXSXGXPXXPPXXEXXPPPPXXXPXRXRXXXTPXRXXAPXAXXXXXRXGPPPPXEXD 425
P PP + G P PP PPPP P +P A G PP
Sbjct: 255 PPPPPAAGSPP-PPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLP 313
Query: 424 LPXLXG 407
P G
Sbjct: 314 PPQAGG 319
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.9 bits (64), Expect = 2.9
Identities = 19/66 (28%), Positives = 21/66 (31%)
Frame = -3
Query: 604 PFPPXSXGXPXXPPXXEXXPPPPXXXPXRXRXXXTPXRXXAPXAXXXXXRXGPPPPXEXD 425
P PP + G P PP PPPP P +P A G PP
Sbjct: 276 PPPPPAAGSPP-PPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLP 334
Query: 424 LPXLXG 407
P G
Sbjct: 335 PPQAGG 340
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.9 bits (64), Expect = 2.9
Identities = 19/66 (28%), Positives = 21/66 (31%)
Frame = -3
Query: 604 PFPPXSXGXPXXPPXXEXXPPPPXXXPXRXRXXXTPXRXXAPXAXXXXXRXGPPPPXEXD 425
P PP + G P PP PPPP P +P A G PP
Sbjct: 261 PPPPPAAGSPP-PPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLP 319
Query: 424 LPXLXG 407
P G
Sbjct: 320 PPQAGG 325
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.1 bits (62), Expect = 5.1
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -3
Query: 616 GWYXPFPPXSXGXPXXPPXXEXXPPPP 536
G P PP G P PP PPPP
Sbjct: 92 GGIPPPPPMMGGIPPPPPMFGAPPPPP 118
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 29.1 bits (62), Expect = 5.1
Identities = 26/92 (28%), Positives = 28/92 (30%), Gaps = 6/92 (6%)
Frame = -1
Query: 699 PGXGAXGXXPGXAG-PFXXXXXIXPFR*GXGIXPSPPXXXXXPXXRRXVRXXPXPP---- 535
PG G PG G P P G G +P P + P PP
Sbjct: 119 PGPPGPGGRPGKPGTPGKPGAPGNPGASGKGAA-APCEPSTPPPCQPCPAGPPGPPGPDG 177
Query: 534 -PXXPGGXXPXXHPXGPXPXGXXAXPXALAHP 442
P PGG P P GP G P P
Sbjct: 178 TPGEPGGPGPAGSPAGPSGPGPAGPPGPAGPP 209
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 28.7 bits (61), Expect = 6.7
Identities = 21/70 (30%), Positives = 22/70 (31%), Gaps = 3/70 (4%)
Frame = +3
Query: 405 PPWRXGRSXSXGGGGPXRXXMXXAXGAXXRX---GVXXXRXRXGXXXGGGGSXSXXGGXX 575
P W G S GGG G G R G GGGG GG
Sbjct: 53 PGWGRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGGRG 112
Query: 576 GXPXEXGGKG 605
G GG+G
Sbjct: 113 GGGGGGGGRG 122
Score = 28.3 bits (60), Expect = 8.9
Identities = 20/64 (31%), Positives = 22/64 (34%)
Frame = +3
Query: 414 RXGRSXSXGGGGPXRXXMXXAXGAXXRXGVXXXRXRXGXXXGGGGSXSXXGGXXGXPXEX 593
R G + GGGG G R G G GGGG GG G
Sbjct: 68 RGGGWGNNGGGGNWGGNGGGGNGGGGRGG--GGGGGGGRGGGGGGRGGGGGGGGGRGGGG 125
Query: 594 GGKG 605
GG+G
Sbjct: 126 GGRG 129
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/58 (27%), Positives = 17/58 (29%)
Frame = -3
Query: 577 PXXPPXXEXXPPPPXXXPXRXRXXXTPXRXXAPXAXXXXXRXGPPPPXEXDLPXLXGG 404
P PP PPPP P P PPPP P + GG
Sbjct: 533 PAPPPVSSIPPPPPIAGLLAANGTNVPIPPPPPPPLPQNLSGAPPPPPPP--PPMLGG 588
>Z78013-8|CAN99686.1| 373|Caenorhabditis elegans Hypothetical
protein F15B9.10 protein.
Length = 373
Score = 28.3 bits (60), Expect = 8.9
Identities = 20/65 (30%), Positives = 23/65 (35%)
Frame = +3
Query: 405 PPWRXGRSXSXGGGGPXRXXMXXAXGAXXRXGVXXXRXRXGXXXGGGGSXSXXGGXXGXP 584
PP + G G GG R + GA G R GGGG GG G
Sbjct: 275 PPQQGG--GGGGAGGMFRNILSSGGGAAA--GSMLGRFLSNRGGGGGGGGGMGGGNRGYG 330
Query: 585 XEXGG 599
+ GG
Sbjct: 331 YQGGG 335
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 28.3 bits (60), Expect = 8.9
Identities = 13/42 (30%), Positives = 14/42 (33%)
Frame = -1
Query: 567 RRXVRXXPXPPPXXPGGXXPXXHPXGPXPXGXXAXPXALAHP 442
R +R PPP PGG P P P P P
Sbjct: 92 RERMRGLGGPPPGMPGGVPPQAQPFNPHGGSMFGGPGGPGGP 133
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 28.3 bits (60), Expect = 8.9
Identities = 13/42 (30%), Positives = 14/42 (33%)
Frame = -1
Query: 567 RRXVRXXPXPPPXXPGGXXPXXHPXGPXPXGXXAXPXALAHP 442
R +R PPP PGG P P P P P
Sbjct: 372 RERMRGLGGPPPGMPGGVPPQAQPFNPHGGSMFGGPGGPGGP 413
>AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical
protein Y41C4A.16 protein.
Length = 309
Score = 28.3 bits (60), Expect = 8.9
Identities = 22/71 (30%), Positives = 23/71 (32%), Gaps = 5/71 (7%)
Frame = -1
Query: 672 PGXAGPFXXXXXIX-PFR*GXGIXPS----PPXXXXXPXXRRXVRXXPXPPPXXPGGXXP 508
PG AGP P R G G P PP P R P PP PG P
Sbjct: 112 PGPAGPSGAPGKPGRPGRPGAGGLPGNPGRPPAQPCHPITPPPCRPCPQGPPGAPGSPGP 171
Query: 507 XXHPXGPXPXG 475
+ P G
Sbjct: 172 QGNAGAPGQPG 182
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 28.3 bits (60), Expect = 8.9
Identities = 18/60 (30%), Positives = 19/60 (31%)
Frame = +3
Query: 405 PPWRXGRSXSXGGGGPXRXXMXXAXGAXXRXGVXXXRXRXGXXXGGGGSXSXXGGXXGXP 584
P G S GGGG A GA G G GG + GG G P
Sbjct: 328 PAGGGGGGYSTGGGGGRADSGGAAGGAGGAGGYSGGGGGGGGGAAAGGGYNAGGGGGGAP 387
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.138 0.443
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,276,775
Number of Sequences: 27780
Number of extensions: 194628
Number of successful extensions: 973
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2563248310
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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