Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_I15
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    29   0.89 
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         28   1.6  
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    27   3.6  

>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -1

Query: 280 AIAGPALINPSRTLRPTFSIFLKS 209
           AIA P +I+P  ++RP  S+F+KS
Sbjct: 202 AIADPNIISPIDSVRPLLSLFIKS 225


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +2

Query: 440 HIMLCGSSX-YISNI*HTTVIA-FLRVTECIYYYIHILNYVSI 562
           HI  C SS  Y  +I H   +A FL +++C YY+ HIL  V +
Sbjct: 48  HIFKCLSSCNYALSILHNICLASFLYLSKC-YYHTHILTSVRL 89


>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -1

Query: 196 SGAALTAXESQHQREDEAQNTYEIHFTEIL*CRRIQNSNTISFDANAKND 47
           S AA+T   S H R   +Q+T ++   E+    RIQN +  + D    ND
Sbjct: 125 SSAAVTERPSMH-RSAPSQDTLDLKKQELFAGARIQNDDESTTDTIPHND 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,648,831
Number of Sequences: 5004
Number of extensions: 47531
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)