Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP22_F_I14
(868 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666... 219 3e-57
08_02_0502 + 17844775-17845092,17845528-17845634,17846039-178464... 31 1.6
05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149 31 1.6
02_05_0237 + 27095817-27097433 30 2.8
11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047 29 3.6
02_05_0417 - 28796121-28796743,28796829-28796925,28797010-287970... 29 4.8
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98... 29 4.8
08_02_0478 + 17621678-17623768 29 6.4
02_05_1123 + 34275272-34275331,34275451-34275523,34275631-342757... 29 6.4
08_01_0346 - 3063440-3064189 28 8.4
05_05_0311 - 24004380-24004440,24004685-24004756,24004875-240049... 28 8.4
>07_03_1220 -
24966169-24966327,24966421-24966552,24966639-24966693,
24967496-24967667,24967771-24967918,24968015-24968050
Length = 233
Score = 219 bits (534), Expect = 3e-57
Identities = 108/121 (89%), Positives = 112/121 (92%)
Frame = +2
Query: 89 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 268
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 7 ISKKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 66
Query: 269 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 448
RIRELTSVVQKRFN PE VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLR
Sbjct: 67 RIRELTSVVQKRFNFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 126
Query: 449 F 451
F
Sbjct: 127 F 127
Score = 142 bits (343), Expect = 4e-34
Identities = 68/103 (66%), Positives = 80/103 (77%), Gaps = 1/103 (0%)
Frame = +3
Query: 450 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 629
F+MESGA+GCEV+VSGKLR QRAKSMKF DG MI SG P N Y+++A RHVLLRQGVLGI
Sbjct: 127 FVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGYPVNLYIDSAVRHVLLRQGVLGI 186
Query: 630 KVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP-TSEV 755
KVKIML WD +GK GP P PD + + PKDE +P T+E+
Sbjct: 187 KVKIMLDWDPKGKQGPMTPLPDLVTIHAPKDEDEFSKPLTAEI 229
>08_02_0502 +
17844775-17845092,17845528-17845634,17846039-17846492,
17846623-17846694,17846804-17846925,17847079-17847294,
17847392-17847500,17847618-17847730,17847916-17848063,
17848274-17848396
Length = 593
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = -1
Query: 211 ADGSDPHFHAGVAVLGQLPSEELIEFRLENPISNKFSLL*N---IVHGHDCNGSREKKQI 41
ADG PH HA A G++ E + ++ P+ +F+L + VH G+ EK +I
Sbjct: 56 ADGERPHGHAAEAGTGRMNLNEYM-VAVDRPLGVRFALAVDGRVFVHSLKKGGNAEKSRI 114
Query: 40 LRI 32
+ +
Sbjct: 115 IMV 117
>05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149
Length = 297
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +2
Query: 665 QERPEEATTRPHPGDRAQGRARAPR 739
Q R + +T RP PG R++GR+R PR
Sbjct: 194 QLRSDYSTHRPPPGGRSRGRSRHPR 218
>02_05_0237 + 27095817-27097433
Length = 538
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 727 GSSLGSVTRMWSGCGFFGPFLPCWSHGNMILTLIPS 620
G+ L +V R GCG+FG + W G + L+PS
Sbjct: 152 GAHLPAVIRALVGCGWFG--IESWIGGRAVFLLLPS 185
>11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047
Length = 604
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 602 ASQARSTRNQGQNHVAVGPARQERPEEATTRPHPGDRAQGRARA 733
A + S R G++ + P R+E + T RP PG + A A
Sbjct: 455 AERTMSLRGGGESAGSDSPCRREEAKSRTPRPQPGSAGERSAAA 498
>02_05_0417 - 28796121-28796743,28796829-28796925,28797010-28797093,
28797173-28797234,28797316-28797460,28797542-28797961,
28798041-28798090,28798163-28798349,28798426-28798680,
28798785-28798953,28799044-28799177,28799291-28799446,
28799534-28799719,28799798-28799962,28800074-28800190,
28800553-28800762,28800850-28801049,28801135-28801405,
28801481-28801547,28801644-28801942,28802425-28802991
Length = 1487
Score = 29.1 bits (62), Expect = 4.8
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +2
Query: 602 ASQARSTRNQGQNHVAVGPARQERPEEATTRPHPGDRAQGRARAP 736
A + R+TRN G A + RP + T + + G A AP
Sbjct: 1161 AEERRATRNAGGGAAPNKAAPKRRPRKTATNTQAAESSDGNAAAP 1205
>02_01_0137 +
988442-988641,989088-989281,989369-989488,989594-989673,
990244-990510,990840-992458,992571-993327,993560-995506
Length = 1727
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +3
Query: 570 NDYVNTATRHVLLR----QGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPK 719
++ +N H+ +R QGVL +++ + +Q +NGP+K + L+TE K
Sbjct: 359 SERINGIVNHLRIRGNPVQGVLQLEILRQIALPKQSQNGPRKSRLTISLMTEHK 412
>08_02_0478 + 17621678-17623768
Length = 696
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = +3
Query: 432 AMVFSXFIMESGARGCEVVVSGKLRGQRAKSM----KFVDGLMIHSGDPCNDYVNTATRH 599
A+ F + R E S LR ++ K + GL+IHSG ND+V+++
Sbjct: 385 ALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFASNDFVSSSLIF 444
Query: 600 VLLRQGVL 623
+ + G++
Sbjct: 445 MYSKSGII 452
>02_05_1123 +
34275272-34275331,34275451-34275523,34275631-34275728,
34276012-34276153,34276261-34276361,34276633-34276716,
34276949-34277014,34277102-34277167,34277324-34277404,
34277489-34277566,34277687-34277848,34277936-34278011,
34278111-34278223,34278323-34278751
Length = 542
Score = 28.7 bits (61), Expect = 6.4
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 612 QGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSEV 755
Q VL I+ K ++ + P P P +EP+ EP P++ S V
Sbjct: 283 QAVLAIEYKRKPEDEESSSSAPLPPPPVSTSESEPEPEPEPVKEVSPV 330
>08_01_0346 - 3063440-3064189
Length = 249
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 380 AESLRYKLIGGLAVRRACYGVLRFHHGIW 466
A S L+GG A ACYGVLR ++
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLRLFANLY 249
>05_05_0311 -
24004380-24004440,24004685-24004756,24004875-24004946,
24005155-24005298,24005535-24005606,24006057-24006286
Length = 216
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -1
Query: 220 DLRADGSDPHFHAGVAVLGQLPSEELIEFRLENPISNKFSLL*NIVHGHDCNGS 59
DL H A +A L QL E+ +E PI +F L N++ CN +
Sbjct: 78 DLEEMNLSGHLSADLARLDQLQFMEIASNNIEGPIPPEFGNLENLISLDLCNNT 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,447,163
Number of Sequences: 37544
Number of extensions: 456584
Number of successful extensions: 1481
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1476
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -