Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_I07
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    28   2.0  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   2.6  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    27   3.5  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   4.6  
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    27   4.6  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    26   6.1  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   6.1  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   6.1  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    26   6.1  

>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 293 PKSPS-SFCPKVPKTLPPPICLSQVTSXRVS 204
           P SP  SF  +VP  +PPP+C   V S   S
Sbjct: 165 PISPDYSFPLRVPINIPPPLCTPSVVSDTFS 195


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -1

Query: 302 PAFPKSPSSFCPKVPKTLPPPICLSQV--TSXRVS 204
           P+ P  PS+  P  PK  PPP+  + V  TS R S
Sbjct: 185 PSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRPS 219


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = -1

Query: 92  FILSCIKFRSSRLECQNLKEFPIVRSVXE 6
           FI+SCI+F+S +L+   L + P+V ++ E
Sbjct: 277 FIISCIRFKSRKLQALKLGK-PLVLTLME 304


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +1

Query: 55  SLEERNLIQLKMNSNLFYIFATTLVCVNAEVYGPFDYAEDYSIRV 189
           S+   NL+++  +S   Y+ + +   V A +Y P D++ D  IR+
Sbjct: 372 SISSLNLLEISASSPS-YVPSGSSFSVRANLYNPLDFSIDLLIRI 415


>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +1

Query: 247 GKVFGTLGQNDDGLFGKAGYNR-EIFNDDRGKLTGQAYGTRVLGPGGDSTNYG 402
           GK  G +G + D     +  +R   F   RG     +Y TRV G GG  T+YG
Sbjct: 166 GKFIG-VGSDGDSRISTSSKSRFPSFGSSRG-----SYRTRVYGDGGGFTDYG 212


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 497 VCGIWIRTPTFLPVVWSRRSSVTKDQTSD 583
           + G+ IR   F P V S +S + KDQ+S+
Sbjct: 635 MAGLDIRKEPFTPAVPSAKSGLKKDQSSE 663


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 691  RSYLSNYIMEQT*TYLATDYCIGVEVITNHGGSLLGVRRLVFCDRT 554
            RS L+ +  EQ    L + Y +  +   NH  ++LG R  +F + T
Sbjct: 997  RSILAEF--EQLTPPLHSPYSVNAKAADNHPVAILGAREYIFSENT 1040


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1275

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 620  NTYTIICCQICLSLFHN 670
            NT TIICC+  + L HN
Sbjct: 1056 NTTTIICCEPVIGLGHN 1072


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -1

Query: 533 AEKWVFLSRSHTPEPDAVIPDLPPICLFRSIVACAFLF 420
           AEKWV L+    P  D V+  +   C    +    F F
Sbjct: 357 AEKWVLLNGQRCPTCDRVVERIDGCCHMNCLCGTHFCF 394


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,261,663
Number of Sequences: 5004
Number of extensions: 67503
Number of successful extensions: 166
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)