Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_H23
         (949 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.044
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    32   0.10 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.31 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.5 bits (73), Expect = 0.044
 Identities = 20/55 (36%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
 Frame = +1

Query: 433 KXPPPPGXGGXXXGXXPPPPPXKXXXPXLXGGGGXXPPPXG--GIXXPPXPGXXP 591
           K PPPP          P P P     P + GG    PPP G  G   PP P   P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAP-IMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 30.7 bits (66), Expect = 0.31
 Identities = 18/54 (33%), Positives = 18/54 (33%)
 Frame = +3

Query: 432 KXPPPPXXXGXXFXXPPPXPPXKXPRPXSXGGGXXSPPPXGGYXXSPXTGGXPP 593
           K PPPP         P P P    P     GG    PPP G     P     PP
Sbjct: 730 KSPPPP-PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 29.9 bits (64), Expect = 0.55
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +3

Query: 438 PPPPXXXGXXFXXPPPXPPXKXPRPXSXGGGXXSPPP 548
           PPPP   G     PPP PP   P   + G    +P P
Sbjct: 762 PPPPPPPGVAGAGPPP-PPPPPPAVSAGGSRYYAPAP 797



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = +1

Query: 439 PPPPGXGGXXXGXXPPPPPXKXXXPXLXGGGGXXPPP 549
           PPPP       G  PPPPP     P +  GG     P
Sbjct: 761 PPPPPPPPGVAGAGPPPPP--PPPPAVSAGGSRYYAP 795


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 17/46 (36%), Positives = 17/46 (36%)
 Frame = +1

Query: 442 PPPGXGGXXXGXXPPPPPXKXXXPXLXGGGGXXPPPXGGIXXPPXP 579
           PP G G       PPPPP     P     G    PP G    PP P
Sbjct: 325 PPIGNGSSNSSLPPPPPP-----PRSNAAGSIPLPPQGRSAPPPPP 365



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
 Frame = +3

Query: 477 PPPXPPXKXPR---PXSXGGGXXSPPPXGGYXXSPXTGGXP-PKKXFXXXPPKXP 629
           PPP PP +  R   P   G    S PP      S   G  P P +     PP  P
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
 Frame = +1

Query: 481 PPPPPXKXXXPXLXGGGGXXPP-PXGGIXXPPXPGXXP 591
           PP PP     P L  G    PP P      PP P   P
Sbjct: 447 PPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484



 Score = 25.8 bits (54), Expect = 8.9
 Identities = 18/64 (28%), Positives = 20/64 (31%), Gaps = 7/64 (10%)
 Frame = +1

Query: 409 GGGFXXXXKXPPPPGXGGXXXGXXPPPPPXK----XXXPXLXGGGGXXPPPXG---GIXX 567
           G G       PPPP       G  P PP  +       P      G  PPP      +  
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSN 387

Query: 568 PPXP 579
           PP P
Sbjct: 388 PPAP 391


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = -1

Query: 547 GGGXXXPPPXDXGRGXFXGGXGGGXXKXXPXXXGGG 440
           GGG   PPP   G G F G  G G         GGG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229



 Score = 29.9 bits (64), Expect = 0.55
 Identities = 25/82 (30%), Positives = 26/82 (31%)
 Frame = -2

Query: 684 GGGGLXXKKPPXRGXFXXXGXXGAPGXKXFLGGXPRXGGXXYTPPXGGXXPXPPXKTGXX 505
           G GG     PP  G F   G  G  G      G    G   +    GG    P    G  
Sbjct: 192 GFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGP----GGF 247

Query: 504 GFXWGGXGXGPXXXXPXPXGGG 439
           G   GG G GP      P G G
Sbjct: 248 GGGLGGFGGGPGGFGGGPGGHG 269



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 18/50 (36%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
 Frame = -3

Query: 578 GXGGXXIPPXGGGXXPPPPXRXGXXXFXG-GGGGXXPKXXPPXPGGGGXF 432
           G  G      GGG   PPP   G   F G GG G          GG G F
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGF 233


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 439 PPPPGXGGXXXGXXPPPPP 495
           PPPP  G       PPPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPP 29



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 439 PPPPGXGGXXXGXXPPPPP 495
           PPPP   G      PPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPP 28



 Score = 25.8 bits (54), Expect = 8.9
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +3

Query: 477 PPPXPPXKXPRPXSXGGGXXSPPPXGGY 560
           PP  PP   P P         PPP  GY
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGY 32


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 20/81 (24%), Positives = 20/81 (24%)
 Frame = +2

Query: 443  PPXGXGXXFXGPXPXPPXKXPXXPVXXGGXGXXPPXGGVXXFPPNRGXPPKKXFXPGAPX 622
            PP         P P P    P  P   G      P       P   G PP       AP 
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151

Query: 623  XPXXXXXPRXGGFXXXRPPPP 685
             P     P         PP P
Sbjct: 1152 VPAPSGAPPVPKPSVAAPPVP 1172



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 16/52 (30%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
 Frame = +3

Query: 477  PPPXPPXKXPRPXSXGGGXXSPP----PXGGYXXSPXTGGXPPKKXFXXXPP 620
            P P P    P P S  G   +PP    P       P   G PP       PP
Sbjct: 1042 PVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPP 1093



 Score = 25.8 bits (54), Expect = 8.9
 Identities = 14/48 (29%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
 Frame = +1

Query: 439  PPPPGXGGXXXGXXPPPPPXKXXXPXLXGGGGXXP-PPXGGIXXPPXP 579
            PP P          PP P      P +    G  P P   GI   P P
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKP 1097


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,012,602
Number of Sequences: 5004
Number of extensions: 28347
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)