Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_H22
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    27   4.7  
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    26   6.2  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   6.2  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    26   8.2  

>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
 Frame = +3

Query: 192 EVKKAFNRHVHYTLVKDRNVATPRDYYFALAHTVKDHLVSRWIRTQQYYYENDPKRVYYL 371
           E  KAF +H++  L+KD N  T R Y   L       L  R + T Q+++E      + +
Sbjct: 123 EALKAFWKHLYSLLLKDPNDTTFR-YPVCLVIPTYWSLYDRELAT-QFFFEECQVPGFTI 180

Query: 372 SLEYYMGRSLQNTMINLGIQ-GYC*RSIIPTWSG 470
           + E  MG      +  L I  GY    I P   G
Sbjct: 181 AYEPLMGLYAIGILHGLVIDIGYEKTDITPILDG 214


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 315 WIRTQQYYYENDPKRVYYL 371
           WI     YY+ DP+R+++L
Sbjct: 246 WIVENAIYYDADPERIFFL 264


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
 Frame = -3

Query: 126 VRSSCLRKFKVK*SQAPVRSLSPVEF---QLKILRIP 25
           V S+  R+++ K S++PV +L+P +F   +L +LR+P
Sbjct: 725 VSSTIDRQYQSKKSESPVWALNPDDFDQNRLTLLRVP 761


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 700  EFMLPVNFYGSVVDTPDGKKWIDTQVVFAMPYDTL 804
            E +LP++FYG +V +P G + +++   F     TL
Sbjct: 1047 ENILPLHFYGELVKSPQGCEVLESSGHFESFMGTL 1081


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,613,111
Number of Sequences: 5004
Number of extensions: 77937
Number of successful extensions: 218
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)