Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_H21
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    29   1.2  
SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|c...    26   6.6  

>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 98   SASLCLNVRGLNLHKTYNELRKDPILRLRSGAGF 199
            +AS C+N+  L ++ T   LR   +  +RSG GF
Sbjct: 993  TASTCVNLLKLPMYSTKQTLRDKLLTAVRSGVGF 1026


>SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 47  KLLILTCLDSAHQCDQYSASLCLNVRGLNLHKTYNEL 157
           K LI   L S ++C +YS  +    R L++HK  NEL
Sbjct: 3   KTLIFIKLSSLNECIKYSTIISKIARELSIHKG-NEL 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,189,699
Number of Sequences: 5004
Number of extensions: 33044
Number of successful extensions: 75
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)