Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP22_F_H20
(857 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 32 0.12
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 31 0.16
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 30 0.37
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 29 1.1
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 29 1.1
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 29 1.1
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 29 1.1
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 28 2.0
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 2.6
SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces p... 27 3.4
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 27 4.5
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 27 4.5
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 4.5
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 26 7.9
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 31.9 bits (69), Expect = 0.12
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = +2
Query: 167 DEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSVFQS 346
D+ ++ ++ +LQN LD+LS+ +D ++ + E L + IE ++SS F++
Sbjct: 275 DKSNKEVDYEYEIRQLQNRLDELSEELDVAQDLLTEKEDEIATLKRQIEEKENSSSAFEN 334
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 31.5 bits (68), Expect = 0.16
Identities = 19/64 (29%), Positives = 34/64 (53%)
Frame = +2
Query: 173 QEEKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSVFQSTT 352
+ E+ L +++L+LQN + DLS DS+ E+ LRS L + +L + +T
Sbjct: 1614 ENERLSLTTRMLDLQNQVKDLSNIKDSLSEDLRTLRS----LEDSVASLQKECKIKSNTV 1669
Query: 353 PNIQ 364
++Q
Sbjct: 1670 ESLQ 1673
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 30.3 bits (65), Expect = 0.37
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +2
Query: 176 EEKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSVFQSTTP 355
+E + L SQ L +Q+ L + +DS K E K ++ Q+L E ++ +
Sbjct: 80 KELSELSSQTLSVQSQLLKVKNSIDSYKNEWSKKTNDAQILLNSYETFCEEEALIEEKLK 139
Query: 356 NIQ 364
NI+
Sbjct: 140 NIE 142
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -2
Query: 685 ENIKKYSFYSGCILA*NFIWELFVRIIIDFSVHFCFFA 572
+ I FYS C+L + I LF +I F F FFA
Sbjct: 259 QQIPMIEFYSNCVLVQSLILSLF---LISFGYFFTFFA 293
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -2
Query: 685 ENIKKYSFYSGCILA*NFIWELFVRIIIDFSVHFCFFA 572
+ I FYS C+L + I LF +I F F FFA
Sbjct: 259 QQIPMIEFYSNCVLVQSLILSLF---LISFGYFFTFFA 293
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -2
Query: 685 ENIKKYSFYSGCILA*NFIWELFVRIIIDFSVHFCFFA 572
+ I FYS C+L + I LF +I F F FFA
Sbjct: 259 QQIPMIEFYSNCVLVQSLILSLF---LISFGYFFTFFA 293
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -2
Query: 685 ENIKKYSFYSGCILA*NFIWELFVRIIIDFSVHFCFFA 572
+ I FYS C+L + I LF +I F F FFA
Sbjct: 259 QQIPMIEFYSNCVLVQSLILSLF---LISFGYFFTFFA 293
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +2
Query: 173 QEEKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIEN 316
Q E+ L+ ++ EL++ + V++ N ++ EN+ L +YI N
Sbjct: 381 QSERTHLLRELEELRHLATSAKEDFVKVEKLNKIIKDENENLKEYIRN 428
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 170 EQEEKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSENQVL 298
+ E RL + +DD+S ++++K + K+ SEN+ L
Sbjct: 232 KDHEILRLKEERTAAMQAIDDISGTIETIKSDCYKVESENKGL 274
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 209 ELQNTLDDLSQRVDSVKEENLKLRSEN 289
EL+N L++ SQR+ ++E+ K SEN
Sbjct: 1609 ELENQLNEKSQRIKELEEQAQKNSSEN 1635
>SPBC1685.11 |rlp1||RecA family ATPase Rlp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 27.1 bits (57), Expect = 3.4
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = -1
Query: 593 GSFLFFCLNRFLDSYRLSIFLTKIY----NKLCTSTQRYICIIISVTSYLIINYQ 441
G L L+ F RL T++Y N+LCTS++ + C ++ T++L+ N Q
Sbjct: 253 GCILMDGLSTFYWQLRLERGYTQVYADLQNRLCTSSKLFGCPVV-CTNWLLNNKQ 306
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/59 (23%), Positives = 30/59 (50%)
Frame = +2
Query: 113 SSSPGLNGPASFEPDSGIDEQEEKARLISQVLELQNTLDDLSQRVDSVKEENLKLRSEN 289
S PG + P + P ++E L ++ ++ + + ++R+DS++ +NL S N
Sbjct: 221 SEEPGASSPVT-SPILKDSQKERIQALRNKAIKTYSVSTESAERIDSIRSDNLSPLSLN 278
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = +2
Query: 74 RSMDSLPSSYTAGSSSPGLNGPASFEPDSGIDEQEEKARLISQVLELQNTLDDL 235
R + LPS+Y S PG + P G + + A + ++ T+ DL
Sbjct: 330 RQLKQLPSAYVTSYSRPGRRPRSMTAPKGGARTRRQAAMYSNSSSGIRETMYDL 383
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 26.6 bits (56), Expect = 4.5
Identities = 18/70 (25%), Positives = 28/70 (40%)
Frame = -1
Query: 563 FLDSYRLSIFLTKIYNKLCTSTQRYICIIISVTSYLIINYQRFMFPTQQHKLLKTNEDNM 384
FLD L L +Y K +S + + T I+ + R + + H LL+ +
Sbjct: 2806 FLDFASLRPKLESLYKKFYSSHPNNTLVFVDETITHILRFHRILNNSGMHALLQGSVGLG 2865
Query: 383 VK*FTSFVYW 354
K FV W
Sbjct: 2866 QKAVVEFVCW 2875
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 475 IMIQIYLWVLVHNLLYILVKKM 540
I I+ WV H+LLYI+ K +
Sbjct: 321 IFSSIFFWVWCHSLLYIVPKTL 342
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,226,936
Number of Sequences: 5004
Number of extensions: 66873
Number of successful extensions: 214
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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