Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_H19
         (880 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0605 - 26066394-26066776,26067466-26067497,26069075-260693...    28   8.6  
03_02_0218 - 6522330-6522458,6523257-6523328,6523555-6523707,652...    28   8.6  
02_01_0076 + 540182-540583,541266-541475,541557-542018,542112-54...    28   8.6  

>03_05_0605 -
           26066394-26066776,26067466-26067497,26069075-26069300,
           26069422-26069613,26070069-26070828,26071044-26071583
          Length = 710

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
 Frame = +1

Query: 262 ECLNYVQQRQADFVPVDPEDMYVAAKIPNQDFVVFQEYRTDEEPDA----PFRYEAVIVI 429
           E LN   QR A+    + ++ Y+  ++P+  +   +E+R  +EP +    P   + V  I
Sbjct: 209 ELLNQCIQRVANS---NLDNRYLEKRLPDDLYAKLKEFRVPDEPHSGILDPEHEKRVRNI 265

Query: 430 HKDLPIDNLD 459
           HK L  D++D
Sbjct: 266 HKALDSDDVD 275


>03_02_0218 -
           6522330-6522458,6523257-6523328,6523555-6523707,
           6524370-6524543,6525655-6525835,6525923-6525990
          Length = 258

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 681 AQYNKLCSMCEHPERCDYPDEFSGYVGALKCLAHNN 788
           A+Y  L S+ +H     +P   +  V AL CLA NN
Sbjct: 39  AKYLALLSLLDHKHLSFWPSTVAAAVVALACLATNN 74


>02_01_0076 +
           540182-540583,541266-541475,541557-542018,542112-542222,
           542309-542488,543083-543367,544581-544701,544802-544923
          Length = 630

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -2

Query: 561 HFWE-NCTLHQHC*RDLVSHVSV-NSSMTRLQAFQLVQ 454
           H W+ NC+L      D++S   V NS+  RL +F LVQ
Sbjct: 247 HKWKSNCSLDSSVCIDIISESEVVNSARRRLDSFDLVQ 284


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,182,645
Number of Sequences: 37544
Number of extensions: 528100
Number of successful extensions: 1169
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)