Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_H18
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.39 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.8  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = -3

Query: 540 GGKXXXPPPXPGGXGFXGGXGXXXPKKKXXXPGGGG 433
           GG    PPP PGG G  GG G            GGG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +2

Query: 434 PPPPGXXXFFFGXXXPXPPXKPXPPGXGGGXXXFPPP 544
           PPPP       G   P PP  P     GG     P P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/53 (32%), Positives = 18/53 (33%)
 Frame = +2

Query: 428 KTPPPPGXXXFFFGXXXPXPPXKPXPPGXGGGXXXFPPPXGXXXFXPKXGXXP 586
           K+PPPP           P P   P P    GG    PPP G     P     P
Sbjct: 730 KSPPPP-PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 23/86 (26%), Positives = 23/86 (26%), Gaps = 5/86 (5%)
 Frame = +1

Query: 433  PPPPXXXGFFFWXPXPXPPXKTPXPXXXGGGXXFPPPXGGXXXXPKXGGXP--XKKXFXK 606
            PP P   G     P P P    P      G    P P       P   G P   K     
Sbjct: 1112 PPVPAPSGA---PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAA 1168

Query: 607  GPXXGPXPXXXPV---XGXFPKXPPP 675
             P   P     PV       P  PPP
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPP 1194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,437,563
Number of Sequences: 5004
Number of extensions: 18730
Number of successful extensions: 47
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)