Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_H14
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide...    29   0.64 
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    28   2.0  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    26   6.0  

>SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide
           synthase Ade7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
 Frame = +2

Query: 263 GKTKQVFDVPDQPGYCLLLNKDRITAGDGVKAHDLEGKAAISNQTNAKVFEILKSAGIKT 442
           GK + +++  + P   L +  DRI+A D +  + +  K  +  + +   F++LK   ++T
Sbjct: 18  GKVRDLYECVEFPDDLLFVATDRISAYDFIMENGIPEKGKVLTKISEFWFDVLK-PHVQT 76

Query: 443 AFV--------------KIASETAFLSKKCEMIPIEWVTRRLATGSFLK 547
             +              +   + + L KK +++PIE + R   TGS  K
Sbjct: 77  HLITSRWEELPPVITKHEELKDRSMLVKKYKILPIEAIVRGYITGSAWK 125


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 529 NWLVPKKESWCTRRLQXSLLQNKRRS-LRMTQTTIPNGQRSKSFQP 663
           NW+ P+K    T R++    +N++ +  R+ +TT+PN      F P
Sbjct: 254 NWIKPEKN--LTVRVETKKQRNRKTNQTRLVRTTVPNDSFFNFFSP 297


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 316 KQAVPRLVRNIEYLFGLTLNEKFAQFILSN 227
           +   P+L+ N+  L  L++NEK+  F++ N
Sbjct: 49  RNGAPKLLLNLFSLENLSMNEKYQVFVVLN 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,463,258
Number of Sequences: 5004
Number of extensions: 72291
Number of successful extensions: 190
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)