Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_H10
         (918 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.075
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.92 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.075
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +1

Query: 436 PPPPGXGGXFFXPPPXPPP 492
           PPPPG  G    PPP PPP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +1

Query: 436 PPPPGXGGXFFXPPPXPPPXXXGA 507
           PP P  GG    PPP PPP   GA
Sbjct: 753 PPAPIMGGP---PPPPPPPGVAGA 773


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -2

Query: 518 HEXGAPXXXGGGXGGGXKXXPPXPGGGG 435
           H  G      GG GGG    PP PGG G
Sbjct: 181 HHRGHNGGGFGGFGGGSGGPPPGPGGFG 208


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 436 PPPPGXGGXFFXPPPXPP 489
           PPPPG       PPP PP
Sbjct: 13  PPPPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,643,488
Number of Sequences: 5004
Number of extensions: 19588
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)