Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP22_F_G17
(904 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81463-5|CAB03853.1| 70|Caenorhabditis elegans Hypothetical pr... 124 7e-29
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 35 0.069
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 35 0.069
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 35 0.069
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 3.4
U58742-5|AAB36859.3| 711|Caenorhabditis elegans Hypothetical pr... 29 3.4
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 3.4
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 25 5.1
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 25 5.1
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 29 6.0
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 28 7.9
>Z81463-5|CAB03853.1| 70|Caenorhabditis elegans Hypothetical
protein C06B8.8 protein.
Length = 70
Score = 124 bits (300), Expect = 7e-29
Identities = 56/70 (80%), Positives = 65/70 (92%)
Frame = +3
Query: 90 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 269
MP+EIK+IKDFL+KARRKDAKSVKIKKN N KFKVRC+ +LYTLV+ DK+KAEKLKQSL
Sbjct: 1 MPKEIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSL 60
Query: 270 PPGLQVKEVK 299
PPG+QVKE+K
Sbjct: 61 PPGIQVKELK 70
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 35.1 bits (77), Expect = 0.069
Identities = 24/70 (34%), Positives = 24/70 (34%)
Frame = -3
Query: 842 GXPPXXXEXPKXPPXGGEXXXXPXPKXPGXXGXXGXGXXXRGPKTKXPFPXGWXXXLXXX 663
G PP P PP GG P P G G GP P P G
Sbjct: 718 GLPPITGGPPPPPPPGGLPPITGGPPPPPPPG--GLPPISGGPPPPPPPPGG-------C 768
Query: 662 KPPXPPPXPG 633
PP PPP PG
Sbjct: 769 PPPPPPPPPG 778
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 35.1 bits (77), Expect = 0.069
Identities = 24/70 (34%), Positives = 24/70 (34%)
Frame = -3
Query: 842 GXPPXXXEXPKXPPXGGEXXXXPXPKXPGXXGXXGXGXXXRGPKTKXPFPXGWXXXLXXX 663
G PP P PP GG P P G G GP P P G
Sbjct: 718 GLPPITGGPPPPPPPGGLPPITGGPPPPPPPG--GLPPISGGPPPPPPPPGG-------C 768
Query: 662 KPPXPPPXPG 633
PP PPP PG
Sbjct: 769 PPPPPPPPPG 778
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 35.1 bits (77), Expect = 0.069
Identities = 24/70 (34%), Positives = 24/70 (34%)
Frame = -3
Query: 842 GXPPXXXEXPKXPPXGGEXXXXPXPKXPGXXGXXGXGXXXRGPKTKXPFPXGWXXXLXXX 663
G PP P PP GG P P G G GP P P G
Sbjct: 301 GLPPITGGPPPPPPPGGLPPITGGPPPPPPPG--GLPPISGGPPPPPPPPGG-------C 351
Query: 662 KPPXPPPXPG 633
PP PPP PG
Sbjct: 352 PPPPPPPPPG 361
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = -2
Query: 576 PXKPKXXPIXPKXXFFPPXXXXGXPXPPXXFXXXGXHXPPPKGXTP 439
P P P P F PP P PP G PPP P
Sbjct: 311 PGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYP 356
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/65 (27%), Positives = 21/65 (32%)
Frame = -3
Query: 836 PPXXXEXPKXPPXGGEXXXXPXPKXPGXXGXXGXGXXXRGPKTKXPFPXGWXXXLXXXKP 657
PP P PP G P P G G P ++ P P + P
Sbjct: 327 PPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMI----P 382
Query: 656 PXPPP 642
P PPP
Sbjct: 383 PPPPP 387
>U58742-5|AAB36859.3| 711|Caenorhabditis elegans Hypothetical
protein F31A3.5 protein.
Length = 711
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 139 GKTPNRSK*RRTLRMSSSRFDAQGSCTPWSSLTKRRLRN 255
G+ NR++ T+ S+S+ A S P+SS+T R RN
Sbjct: 194 GRPQNRTRPDETVYQSASQIYAPNSEDPYSSITSERGRN 232
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = -2
Query: 576 PXKPKXXPIXPKXXFFPPXXXXGXPXPPXXFXXXGXHXPPPKGXTP 439
P P P P F PP P PP G PPP P
Sbjct: 321 PGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYP 366
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/65 (27%), Positives = 21/65 (32%)
Frame = -3
Query: 836 PPXXXEXPKXPPXGGEXXXXPXPKXPGXXGXXGXGXXXRGPKTKXPFPXGWXXXLXXXKP 657
PP P PP G P P G G P ++ P P + P
Sbjct: 337 PPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPPSGHGMI----P 392
Query: 656 PXPPP 642
P PPP
Sbjct: 393 PPPPP 397
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 24.6 bits (51), Expect(2) = 5.1
Identities = 15/46 (32%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Frame = -3
Query: 761 PGXXGXXGX----GXXXRGPKTKXPFPXGWXXXLXXXKPPXPPPXP 636
PG G G G G + P P L PP PPP P
Sbjct: 636 PGARGGAGAKANKGWYGSGGGSSMPMPVPPPGGLGGFMPPPPPPPP 681
Score = 22.6 bits (46), Expect(2) = 5.1
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -3
Query: 659 PPXPPPXPG 633
PP PPP PG
Sbjct: 676 PPPPPPMPG 684
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 24.6 bits (51), Expect(2) = 5.1
Identities = 15/46 (32%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Frame = -3
Query: 761 PGXXGXXGX----GXXXRGPKTKXPFPXGWXXXLXXXKPPXPPPXP 636
PG G G G G + P P L PP PPP P
Sbjct: 636 PGARGGAGAKANKGWYGSGGGSSMPMPVPPPGGLGGFMPPPPPPPP 681
Score = 22.6 bits (46), Expect(2) = 5.1
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -3
Query: 659 PPXPPPXPG 633
PP PPP PG
Sbjct: 676 PPPPPPMPG 684
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/49 (28%), Positives = 14/49 (28%)
Frame = -3
Query: 833 PXXXEXPKXPPXGGEXXXXPXPKXPGXXGXXGXGXXXRGPKTKXPFPXG 687
P P P G P P P G G GP P P G
Sbjct: 993 PNGPSDPVKPSPSGPSPNGPSPNGPSPNGPSPNGPSPNGPTPNWPSPNG 1041
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/50 (30%), Positives = 15/50 (30%), Gaps = 1/50 (2%)
Frame = -3
Query: 833 PXXXEXPKXP-PXGGEXXXXPXPKXPGXXGXXGXGXXXRGPKTKXPFPXG 687
P P P P G P P P G G GP P P G
Sbjct: 982 PNGPSDPNKPSPNGPSDPVKPSPSGPSPNGPSPNGPSPNGPSPNGPSPNG 1031
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/41 (34%), Positives = 14/41 (34%)
Frame = -2
Query: 555 PIXPKXXFFPPXXXXGXPXPPXXFXXXGXHXPPPKGXTPXP 433
P P PP G P PP F PP G P P
Sbjct: 67 PPVPNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPP 107
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,287,762
Number of Sequences: 27780
Number of extensions: 251702
Number of successful extensions: 736
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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