Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_G15
         (1003 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016449-9|AAG23993.2|  351|Caenorhabditis elegans Serpentine re...    33   0.42 
Z36719-4|CAA85315.2|  513|Caenorhabditis elegans Hypothetical pr...    29   6.9  

>AF016449-9|AAG23993.2|  351|Caenorhabditis elegans Serpentine
           receptor, class t protein9 protein.
          Length = 351

 Score = 32.7 bits (71), Expect = 0.42
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
 Frame = -3

Query: 497 IILVPNANFQWEFARSAFVY-----SQXTVVCVFACLPTKV-LFRRSLYSADLVKVVEKV 336
           I L  N  F++ ++ S ++Y     SQ  ++CVF  +   + LF R +Y    + ++  +
Sbjct: 215 IYLSYNLLFKFGYSTSTWLYKTKLISQSIILCVFHAVAAGIYLFMRFIYYTPTLIILSHI 274

Query: 335 FWFWTSPFM 309
            W W+S  M
Sbjct: 275 IWGWSSGCM 283


>Z36719-4|CAA85315.2|  513|Caenorhabditis elegans Hypothetical
           protein C06C3.8 protein.
          Length = 513

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -2

Query: 243 LLESAEDSGLRHKVRPSRYERVHNEVSTSLHFF 145
           + + A+D GLR+++R S  E++HNE  T  H +
Sbjct: 307 IFKLAKD-GLRNRLRDSITEKLHNEADTENHLW 338


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,252,265
Number of Sequences: 27780
Number of extensions: 281251
Number of successful extensions: 617
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2626021738
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)