Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP22_F_G12
(940 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 33 0.39
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 31 1.2
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.6
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 2.1
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 2.1
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 29 4.8
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 29 4.8
AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical ... 29 6.3
AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical ... 29 6.3
AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical ... 29 6.3
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 32.7 bits (71), Expect = 0.39
Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Frame = +2
Query: 626 PXKXXNPKKGRLXGXFPXGP----APLXXLPKXPXPXRXVXNPPRXLKNPXRFPP 778
P P+K R G P P P P+ P P R PP + P R PP
Sbjct: 122 PPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPP 176
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 31.1 bits (67), Expect = 1.2
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -1
Query: 934 GGEXXXPRXGETPXAGGXGEXAXPXPXGXKGGXG 833
G E G TP GG GE P P G G G
Sbjct: 180 GPEGAPGEDGNTPSRGGVGEAGPPGPPGTSGNPG 213
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/60 (28%), Positives = 18/60 (30%)
Frame = -3
Query: 581 GKXXXPPWGGXXPXPXPEGXGXXXXXXXXXXGPQKPXPXXRGXGGXXKXEKXXPPPPGPG 402
GK PP G P P P+G P P G PPPP G
Sbjct: 227 GKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAG 286
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +3
Query: 828 GXPXPPFXPXGXGXAXSPYPPAXGVSPXRGXXXSPP 935
G P PP P G S PP G SP SPP
Sbjct: 295 GSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 330
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/60 (28%), Positives = 18/60 (30%)
Frame = -3
Query: 581 GKXXXPPWGGXXPXPXPEGXGXXXXXXXXXXGPQKPXPXXRGXGGXXKXEKXXPPPPGPG 402
GK PP G P P P+G P P G PPPP G
Sbjct: 248 GKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAG 307
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +3
Query: 828 GXPXPPFXPXGXGXAXSPYPPAXGVSPXRGXXXSPP 935
G P PP P G S PP G SP SPP
Sbjct: 316 GSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 351
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/60 (28%), Positives = 18/60 (30%)
Frame = -3
Query: 581 GKXXXPPWGGXXPXPXPEGXGXXXXXXXXXXGPQKPXPXXRGXGGXXKXEKXXPPPPGPG 402
GK PP G P P P+G P P G PPPP G
Sbjct: 233 GKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAG 292
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +3
Query: 828 GXPXPPFXPXGXGXAXSPYPPAXGVSPXRGXXXSPP 935
G P PP P G S PP G SP SPP
Sbjct: 301 GSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 336
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/55 (32%), Positives = 18/55 (32%)
Frame = -3
Query: 566 PPWGGXXPXPXPEGXGXXXXXXXXXXGPQKPXPXXRGXGGXXKXEKXXPPPPGPG 402
PP G P P P G P P P G G PPPP PG
Sbjct: 290 PPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMG----GMPPPPPPG 340
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 2.1
Identities = 18/55 (32%), Positives = 18/55 (32%)
Frame = -3
Query: 566 PPWGGXXPXPXPEGXGXXXXXXXXXXGPQKPXPXXRGXGGXXKXEKXXPPPPGPG 402
PP G P P P G P P P G G PPPP PG
Sbjct: 300 PPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMG----GMPPPPPPG 350
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 29.1 bits (62), Expect = 4.8
Identities = 21/78 (26%), Positives = 21/78 (26%), Gaps = 1/78 (1%)
Frame = +3
Query: 669 FSXXAPPP*XXFPKXPPXXXGXXTPXGX*KIXXXXXXXXXXXXXXXXXXXXFXGXPXPPF 848
F PPP FP PP G P F G P PPF
Sbjct: 293 FGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMFRGGPYPPF 352
Query: 849 XPXGXGXAXSP-YPPAXG 899
P P PP G
Sbjct: 353 FPPPPPHFMRPSSPPTDG 370
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 29.1 bits (62), Expect = 4.8
Identities = 21/78 (26%), Positives = 21/78 (26%), Gaps = 1/78 (1%)
Frame = +3
Query: 669 FSXXAPPP*XXFPKXPPXXXGXXTPXGX*KIXXXXXXXXXXXXXXXXXXXXFXGXPXPPF 848
F PPP FP PP G P F G P PPF
Sbjct: 293 FGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMFRGGPYPPF 352
Query: 849 XPXGXGXAXSP-YPPAXG 899
P P PP G
Sbjct: 353 FPPPPPHFMRPSSPPTDG 370
>AF098501-3|AAM69106.1| 275|Caenorhabditis elegans Hypothetical
protein H28G03.2c protein.
Length = 275
Score = 28.7 bits (61), Expect = 6.3
Identities = 19/65 (29%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Frame = +3
Query: 552 PPPRGXXXF-PPXXGXXPXKTFXPXXHXRXXTRKRAGXRXFSXXAPPP*XXFPKXPPXXX 728
PP G F PP G P P H A S PPP P PP
Sbjct: 84 PPGMGPPPFMPPPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPPPFSVPPSVPPPTS 143
Query: 729 GXXTP 743
P
Sbjct: 144 SAAAP 148
>AF098501-2|AAM69105.1| 298|Caenorhabditis elegans Hypothetical
protein H28G03.2b protein.
Length = 298
Score = 28.7 bits (61), Expect = 6.3
Identities = 19/65 (29%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Frame = +3
Query: 552 PPPRGXXXF-PPXXGXXPXKTFXPXXHXRXXTRKRAGXRXFSXXAPPP*XXFPKXPPXXX 728
PP G F PP G P P H A S PPP P PP
Sbjct: 107 PPGMGPPPFMPPPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPPPFSVPPSVPPPTS 166
Query: 729 GXXTP 743
P
Sbjct: 167 SAAAP 171
>AF098501-1|AAC67404.2| 548|Caenorhabditis elegans Hypothetical
protein H28G03.2a protein.
Length = 548
Score = 28.7 bits (61), Expect = 6.3
Identities = 19/65 (29%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Frame = +3
Query: 552 PPPRGXXXF-PPXXGXXPXKTFXPXXHXRXXTRKRAGXRXFSXXAPPP*XXFPKXPPXXX 728
PP G F PP G P P H A S PPP P PP
Sbjct: 357 PPGMGPPPFMPPPIGMPPPPLGMPPPHIGLGAAPYAVPPPMSLLGPPPFSVPPSVPPPTS 416
Query: 729 GXXTP 743
P
Sbjct: 417 SAAAP 421
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,895,497
Number of Sequences: 27780
Number of extensions: 194068
Number of successful extensions: 896
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2423194158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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