Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_G06
         (894 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.8  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   5.0  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   6.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   8.7  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/40 (22%), Positives = 20/40 (50%)
 Frame = -2

Query: 308 FPYLFLGLCTGSRLVXRKAAASRREETLSHSCRRLGCRIP 189
           F + + G      L+  + +   RE+ ++++CR L   +P
Sbjct: 416 FEHRYQGKFFDEELILGELSEKLREDVINYNCRSLVASVP 455


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/40 (22%), Positives = 20/40 (50%)
 Frame = -2

Query: 308 FPYLFLGLCTGSRLVXRKAAASRREETLSHSCRRLGCRIP 189
           F + + G      L+  + +   RE+ ++++CR L   +P
Sbjct: 384 FEHRYQGKFFDEELILGELSEKLREDVINYNCRSLVASVP 423


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 293 GRDKGNPWGRGGSR 334
           GR KG   G+GGSR
Sbjct: 79  GRGKGRGHGKGGSR 92



 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 290 QGRDKGNPWGRGGSRVNT 343
           +G  KG   GRGG+R  T
Sbjct: 84  RGHGKGGSRGRGGNRGRT 101


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 598 PRPLQCXTSFSSRGHW 645
           P P++   +F S GHW
Sbjct: 226 PLPVRVLPNFPSSGHW 241


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 396 SRISGRILRNADLIIRMCV 340
           SRIS RI RN  L+   C+
Sbjct: 34  SRISNRISRNRVLLRGQCI 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,466
Number of Sequences: 438
Number of extensions: 4900
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)