Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_G04
         (923 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   2.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.7  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    27   4.9  
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    27   4.9  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    26   8.6  

>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +1

Query: 655 QDYKDTRRFPLGSSPRALSCFRPXPALPDTCPPF 756
           QDY   RRF   SS    S F   PA   +  PF
Sbjct: 219 QDYNQGRRFGNASSTNTTSAFGSTPAFGASTTPF 252


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
 Frame = +1

Query: 727 PALPDTCPPFLPSGSVAXFS*LTXVXIS---ISGVGRSLPXWAVCPXPPVXPXPXXPYP 894
           P+LP + PP LP G+ A         I+    +G+  + P     P PP  P P    P
Sbjct: 429 PSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 710 PVSDPCPLYRIPVRXFSLREAWRXSHSS 793
           PV  P  L R+P+R  S+ E  R  H S
Sbjct: 525 PVRSPEQLVRLPIRSCSIEELERAMHDS 552


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 666 RYQAFPPWKLPSCALLFPTXARFTGYLS 749
           + Q FPPW+L  C +        T YL+
Sbjct: 214 KLQGFPPWQLRLCEIFHDPILYTTNYLT 241


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +2

Query: 608 RASQKSTLKSEVAKPDRTIKIPGVSPLEAPLVRSPVSDPCPLYRIPVRXFSLRE 769
           R  + S +K   A   RTI + GV+P E+ L   P   P P  ++     SL++
Sbjct: 505 RLERTSPVKELPAIRPRTIPLNGVAPYESELRPPPKWKPMPDLKVVRSRPSLKQ 558


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,820,194
Number of Sequences: 5004
Number of extensions: 46401
Number of successful extensions: 80
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)