Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_G03
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    31   0.16 
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    29   0.65 
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    29   0.86 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.5  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    26   6.1  

>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -2

Query: 256 WSSVTFTTSTPLA--SPRLLMTSPLNMAVNY*FLNHV*TYNRLILTTQNNLY*ST*TLIP 83
           W  V FTTS  ++  SP  ++       V+  F  H+  +NRL++   ++   ST T+IP
Sbjct: 472 WYLVRFTTSATISQDSPPCIVEPVTFEEVDLEFEKHISYHNRLLIYVDDDCEASTRTVIP 531

Query: 82  T 80
           T
Sbjct: 532 T 532


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 638 RLLSSIQIYNLKENIKEDDLQHLHLFTEYGR 730
           RLLS ++++ +  +I  +DL HL L  +Y R
Sbjct: 206 RLLSPLEVHTIFTHISSEDLAHLGLNEQYAR 236


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 11/28 (39%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = -2

Query: 787 TDQEHENLERCLIIIIARQP-SVFRKKV 707
           T+ EH+NL + ++++++ QP S FR+ V
Sbjct: 881 TNDEHQNLHKEMLVVLSSQPKSTFRRAV 908


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 308 GQGPSCGRSQRRWRLPRWKVLLAGLLPQIPK 400
           G+GP CG     WR+  W   L G++P + +
Sbjct: 645 GKGPGCGFWAPSWRV--WLFFLRGIVPLLER 673


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 366 SFLLDFFLRYLKAPPSSRDSAAWLGQEDEPLTGF 467
           S +LD FLR L      ++SA WLG   E ++ +
Sbjct: 444 SSILDCFLRRLAQLGHYKESAEWLGMAIEKISTY 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,060,577
Number of Sequences: 5004
Number of extensions: 56747
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)