Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_G01
         (903 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220...   101   8e-22
08_01_0438 + 3852221-3853207,3853544-3854757,3855258-3855330,385...    31   1.7  
06_03_0118 + 16836401-16837456,16837558-16837701,16837812-16838231     29   5.1  

>03_04_0129 +
           17520753-17520842,17521651-17521741,17521887-17522070,
           17522149-17522224
          Length = 146

 Score =  101 bits (242), Expect = 8e-22
 Identities = 42/83 (50%), Positives = 61/83 (73%)
 Frame = +1

Query: 238 WFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALK 417
           W+Y R A+I R IY+R  +GV    KI+GGR+RNG  P HFC+SSG+I+R  LQ L+ + 
Sbjct: 55  WYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMG 114

Query: 418 LVEKVQDGGRILTTQGRRDLDRI 486
           +++    GGR++T+QGRRDLD++
Sbjct: 115 IIDVDPKGGRLITSQGRRDLDQV 137



 Score = 67.7 bits (158), Expect = 1e-11
 Identities = 29/46 (63%), Positives = 38/46 (82%)
 Frame = +3

Query: 96  TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDP 233
           TVKDV   + VK  +AHLK++GK+++PE +D+VKTARFKEL PYDP
Sbjct: 8   TVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDP 53


>08_01_0438 +
           3852221-3853207,3853544-3854757,3855258-3855330,
           3856715-3856843,3857060-3857103,3857186-3857265,
           3857342-3857396,3857712-3857919
          Length = 929

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = +3

Query: 72  HKARCVPVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPALV 242
           HKA    VT++ +   + +++    +KK+ K K  +H  ++ + RF  + P+  ALV
Sbjct: 690 HKALDEVVTLRKIRDQQNLQSCKRPIKKSAKGKDSDHSTIISSTRF-SVVPWKYALV 745


>06_03_0118 + 16836401-16837456,16837558-16837701,16837812-16838231
          Length = 539

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = +3

Query: 141 AHLKKTGKVKVPEHMDLVKTARFKEL-APYDPA-LVLCALCCHPSSYLH-SLTCWSKDCH 311
           AHLK TG+   P+ +D       + +    D A +V  AL  HP  +    +TC   D H
Sbjct: 100 AHLKHTGRAPGPDELDRTGGLLLRAMDGMRDVARMVSSALAAHPGPFRSVHITCTPMDAH 159

Query: 312 Q 314
           +
Sbjct: 160 R 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,729,081
Number of Sequences: 37544
Number of extensions: 345778
Number of successful extensions: 863
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)