Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_F24
         (911 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14331-3|AAA28096.1|  180|Caenorhabditis elegans Hypothetical pr...   163   2e-40
AC084161-2|AAK29732.3|  782|Caenorhabditis elegans Hypothetical ...    32   0.65 
AF016653-2|AAC48225.2|  914|Caenorhabditis elegans Patched relat...    29   3.5  
Z22177-1|CAA80151.1|  578|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical ...    29   6.1  

>L14331-3|AAA28096.1|  180|Caenorhabditis elegans Hypothetical
           protein K12H4.4 protein.
          Length = 180

 Score =  163 bits (396), Expect = 2e-40
 Identities = 78/177 (44%), Positives = 106/177 (59%)
 Frame = +2

Query: 80  MYSVLTRGNAILTYTLSVXXXXXXXXXXXXXXVDYRTGAQMNTVKVVVKNVPDYGASRER 259
           M+++L+R NA+L +TL V              +DY    ++    V V+NV DY    ++
Sbjct: 1   MHNLLSRANALLAFTLWVMAAVTAACFLSTVFLDYTVPTKLTVNDVKVRNVVDYATDEQQ 60

Query: 260 NDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYITPSNELNQVVLWDKIILRGENAVLDF 439
            DL  L F+LK D S +FNWNVKQLF+YL AEY +  NE+NQVVLWD+I+ R +  V+D 
Sbjct: 61  ADLATLNFNLKVDFSKIFNWNVKQLFVYLVAEYKSKVNEVNQVVLWDRIVERADRVVMDE 120

Query: 440 KNMNTKYYFWDDGNGLKGHSNVTLTLSWNIIPNAGLLPNIQALGQHSFKFPIEYTQT 610
             + +KYYF DDG  L  H NVT  L +N+IPN+G L  +Q+  Q    FP  YT T
Sbjct: 121 IGVKSKYYFLDDGTNLLNHKNVTFVLRYNVIPNSGYLRLVQSSDQVVVPFPTTYTTT 177


>AC084161-2|AAK29732.3|  782|Caenorhabditis elegans Hypothetical
           protein Y92H12A.4 protein.
          Length = 782

 Score = 31.9 bits (69), Expect = 0.65
 Identities = 28/88 (31%), Positives = 45/88 (51%)
 Frame = +2

Query: 299 LSNLFNWNVKQLFLYLTAEYITPSNELNQVVLWDKIILRGENAVLDFKNMNTKYYFWDDG 478
           +SNL  +  KQ  L    +++  S EL + V +  ++  G+N +  F  +N K++  +DG
Sbjct: 262 VSNLEEYMTKQNVL----QHVRISIELERKVQF-MVVNGGKNLLTYFTWLNNKFFRANDG 316

Query: 479 NGLKGHSNVTLTLSWNIIPNAGLLPNIQ 562
             L+    V   LS N+ P A  LPN Q
Sbjct: 317 PALRAEC-VRYVLSMNLDP-AKALPNAQ 342


>AF016653-2|AAC48225.2|  914|Caenorhabditis elegans Patched related
           family protein 3 protein.
          Length = 914

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 21/59 (35%), Positives = 32/59 (54%)
 Frame = +1

Query: 388 CIVGQNNIKR*KRCARLQEHEH*VLFLGRWQRLKRSQQCHINIIMEYYSQCWLVTQHPG 564
           CIVG  NIK     + L  ++   LFL     ++  +Q   +II  YYS CW++ ++PG
Sbjct: 519 CIVGTVNIK-----SELSPNK---LFLAESNIVEIFKQRKSHII-PYYSACWVLVENPG 568


>Z22177-1|CAA80151.1|  578|Caenorhabditis elegans Hypothetical
           protein ZK512.2 protein.
          Length = 578

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 265 IISFPRCSVVRYVFNYYFNCIHLGPSSVVHSQ 170
           +I FP C+ VRY +  +  C+   P   VH +
Sbjct: 261 LIFFPSCNSVRYFYKIFERCLGKRPLFAVHGK 292


>AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical
           protein F52C12.4 protein.
          Length = 1635

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = -3

Query: 549 NKPALGIIFHDNVNVTLL*PFKPLPSSQK*YLVFMFLKSST 427
           N PA  I+F+ NV++ L+  F P  +S K +L F+   SST
Sbjct: 338 NDPADDILFYKNVSICLISRF-PFFNSFKRFLFFLHRMSST 377


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,217,871
Number of Sequences: 27780
Number of extensions: 271881
Number of successful extensions: 602
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)