Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_F23
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    27   3.7  
SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase Le...    27   4.9  
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   4.9  

>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 780 AFRPTSSVK*AILSSXCWGKSGNWNRLA 697
           AF P  S+   +     + K GNWNR+A
Sbjct: 499 AFHPLISIYYLVSERRVYEKGGNWNRIA 526


>SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase
           Leu1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = -3

Query: 256 LGDFVVLSFIADLVNVVEKRQNLLLLFDERSVNRCRFXVHGTVLSESEGNKPTLKLKTVI 77
           +G  +V S +  L  V +KR  L L F+E  +       +GT L++ E  K  L+   V+
Sbjct: 14  IGPEIVASALEVLKVVEKKRPELKLEFEEHKIGGASIDAYGTPLTD-ETVKACLEADGVL 72

Query: 76  HG 71
            G
Sbjct: 73  LG 74


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 809 PVLGEPLVNTXLSXERSWGNLLLLST 886
           PVL  P ++   S ER WG  ++LST
Sbjct: 80  PVLKFPGIHYTYSRERLWGTCVILST 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,320,011
Number of Sequences: 5004
Number of extensions: 64460
Number of successful extensions: 166
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)