Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_F20
         (895 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008           35   0.10 
06_03_0253 + 18753901-18754278,18754873-18754968,18755167-187553...    31   0.94 
03_06_0471 + 34169562-34169892,34170121-34170347                       31   0.94 
05_05_0153 - 22766805-22767023,22767662-22767940,22768294-227684...    30   2.9  
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814...    29   3.8  
02_04_0382 - 22501041-22501279,22501717-22501810                       29   6.6  

>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
          Length = 580

 Score = 34.7 bits (76), Expect = 0.10
 Identities = 27/72 (37%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
 Frame = +3

Query: 165 TPXPFFA--QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDRPQGRP 329
           TP P  A  QP     Y P  + P  V PP  Y P  +G  P     N + Y + P GRP
Sbjct: 378 TPLPPAAPQQPEEAMSYAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRP 436

Query: 330 YFKPTPFPGARG 365
              P P  GA G
Sbjct: 437 NSGPPPSYGAGG 448


>06_03_0253 +
           18753901-18754278,18754873-18754968,18755167-18755376,
           18756028-18756093,18756379-18756576,18756616-18756810,
           18756968-18757014,18757147-18757234,18757331-18757681,
           18758593-18759123
          Length = 719

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -1

Query: 178 NGXGVIDHNLSVGHSQQSEDENHEEF-HFYMITSYHRXKILKLCQNLK 38
           N   V+DH  S  H+  SE+ +      F+   SY R ++L+LCQN++
Sbjct: 206 NIYSVLDHGESNEHTFTSEEVHQPGIPSFHQRISYTRDQLLQLCQNVE 253


>03_06_0471 + 34169562-34169892,34170121-34170347
          Length = 185

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +3

Query: 207 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPFPG 356
           Y P    P    PP  Y P+  GY P   GAY       +P + P  +PG
Sbjct: 56  YPPAGGYPGAQYPPSGYPPSQGGYPP---GAYPPSGYPQQPGYPPAGYPG 102


>05_05_0153 -
           22766805-22767023,22767662-22767940,22768294-22768401,
           22768500-22768779,22768871-22769174,22769367-22769975,
           22770186-22770411
          Length = 674

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 112 HEEFHFYMITSYHRXKILKLCQNLKEFPIVMN 17
           HEE+  + +  +HR       +N KEFPIVMN
Sbjct: 364 HEEYEVFELRIFHRKNRTGFEEN-KEFPIVMN 394


>06_03_0874 -
           25580417-25580419,25580504-25580604,25580828-25581411,
           25581523-25581594,25581667-25581793,25583412-25583516,
           25583643-25583676
          Length = 341

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
 Frame = +3

Query: 168 PXPFFAQPTVGNGYEPI-DNRPYIVNPPKDY---NPNGNGYEPIDNGAYYVDRPQGRPYF 335
           P P+  QP  G  Y P      Y   P ++     P    Y P   G  Y  +PQG+PY 
Sbjct: 229 PQPYPPQPQ-GQTYPPQPQGETYQPQPQRETYPPQPQVQPYPPKPQGQPYPPQPQGQPY- 286

Query: 336 KPTPF 350
            P P+
Sbjct: 287 PPQPY 291


>02_04_0382 - 22501041-22501279,22501717-22501810
          Length = 110

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = +3

Query: 183 AQPTVGNGYEPIDNRPYIVNPPK----DYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPF 350
           A+ T  +G  P ++  +   PP     D  P+ + Y+P  +  YY D P    Y+ P P 
Sbjct: 28  AEQTHDDGDNPPESPDHEDPPPSPEYYDPPPSPDYYDPPHSPDYY-DPPPSPDYYDPPPS 86

Query: 351 PGARGG 368
           P   GG
Sbjct: 87  PYYGGG 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,877,879
Number of Sequences: 37544
Number of extensions: 310421
Number of successful extensions: 719
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)