Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP22_F_F16
(878 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 33 0.40
06_03_1306 + 29208882-29209547,29209641-29209854,29209947-292100... 31 0.92
08_01_0356 + 3131214-3132443,3132584-3132778,3132892-3132972,313... 31 1.2
12_02_0207 - 15542329-15542970 31 1.6
03_02_0744 + 10880496-10880891 29 4.9
08_02_0099 + 12343518-12343678,12344193-12344393,12344669-123448... 29 6.5
07_03_0741 - 21107566-21107838,21107964-21108102,21108189-211084... 29 6.5
02_01_0427 - 3124209-3124307,3124453-3125240,3125510-3125867,312... 29 6.5
03_06_0559 + 34719296-34719410,34719519-34719577,34719664-347213... 28 8.6
02_04_0206 + 20916063-20919669,20919816-20920014,20920935-209210... 28 8.6
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 32.7 bits (71), Expect = 0.40
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = -1
Query: 599 PFGTDGAKHRSGQTGQAPAYCLGYTHCSEVDHWDGDANLIKLI 471
P G + HR G+TG+A A + YT SE D W +L+K++
Sbjct: 926 PTGIEDYVHRIGRTGRAGATGVSYTFFSEQD-WKYAGDLVKVL 967
>06_03_1306 + 29208882-29209547,29209641-29209854,29209947-29210023,
29210132-29210171,29210254-29210323,29210419-29210488,
29210747-29210995,29212810-29214700,29215458-29215771
Length = 1196
Score = 31.5 bits (68), Expect = 0.92
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Frame = +1
Query: 271 IFKESGWAKNNVIDKKKVSDYFEQFAKDNPDWSAAVQNFKTTCLSDSLKPQGVDTNCP-- 444
+F WA +++ + +E DN WSAA K T ++ + NCP
Sbjct: 921 MFSSPEWASSDLASRSSFRHVYEVVKTDNAFWSAAADILKLTDPLITVLYKLEADNCPIG 980
Query: 445 -AYDIIHCA 468
YD + CA
Sbjct: 981 ILYDAMDCA 989
>08_01_0356 +
3131214-3132443,3132584-3132778,3132892-3132972,
3133324-3133383,3133466-3133560,3133660-3133816,
3133896-3134021,3134398-3134478,3134557-3134647,
3134735-3134868,3135068-3135136,3135219-3135308,
3135405-3135508,3135594-3135762,3136066-3136134
Length = 916
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/73 (28%), Positives = 37/73 (50%)
Frame = +1
Query: 199 PKIIQPEVSEKCNKPISECDKTRCIFKESGWAKNNVIDKKKVSDYFEQFAKDNPDWSAAV 378
PKI QP + +KP++ T K G ++ D+K ++ +F+K + SA++
Sbjct: 179 PKIEQPGDDSEDDKPLASRLPTNAALKRGGNVSDDSEDEKPLA---ARFSKVTGNASASI 235
Query: 379 QNFKTTCLSDSLK 417
+ K LS S+K
Sbjct: 236 SSSKDKVLSASIK 248
>12_02_0207 - 15542329-15542970
Length = 213
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -1
Query: 209 IILGLPR--HGNIVFGNSPQ*TRGCSGMLPLNTPTTMGNKNKIVSIL-SAQRSRN 54
++ G+P+ HG ++ G P G G + + PT N++V ++ SA R+R+
Sbjct: 101 VLAGIPKNGHGGVIAGRPPPSLGGGGGAVVVRAPTVRVKVNRLVVLVPSALRARS 155
>03_02_0744 + 10880496-10880891
Length = 131
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 250 ECDKTRCIFKESGWAKNNVIDKKKVSDYFEQFAKDNPD 363
EC +E A ++ D+KK SD E++ KDNP+
Sbjct: 85 ECAAAWDEVEELSAAASHARDRKKDSDPLEEYCKDNPE 122
>08_02_0099 +
12343518-12343678,12344193-12344393,12344669-12344846,
12347201-12347463,12347596-12347874,12348045-12349182,
12349303-12349473
Length = 796
Score = 28.7 bits (61), Expect = 6.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 523 CVYPRQYAGACPVCPERCFAPSVPNGSCNA 612
CV+ + C CP APS PNG+C++
Sbjct: 381 CVFGLPWLAPCRPCPT-AGAPSPPNGTCHS 409
>07_03_0741 -
21107566-21107838,21107964-21108102,21108189-21108426,
21108629-21108836,21108945-21109066,21109146-21109271,
21109356-21109774,21109844-21110268
Length = 649
Score = 28.7 bits (61), Expect = 6.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 478 FIKFASPSQWSTSEQCVYPRQYAGACPV 561
F+ F SP QW S+ YP Q + + V
Sbjct: 127 FMDFLSPDQWQVSQMIWYPEQASASVDV 154
>02_01_0427 -
3124209-3124307,3124453-3125240,3125510-3125867,
3125902-3126567
Length = 636
Score = 28.7 bits (61), Expect = 6.5
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 70 ALKMLTILFLLPIVVGVLSGNIPEQPRVYCGELPNTIFPC-LGNPKIIQPEVSEKCN 237
ALK L L I L G IP + G+L +T C +GNPK+ P +S +C+
Sbjct: 514 ALKNLNFLTRFNISYNDLEGPIPTE-----GQL-STFTDCFIGNPKLCGPMLSHRCS 564
>03_06_0559 +
34719296-34719410,34719519-34719577,34719664-34721322,
34722421-34722562,34722645-34723330
Length = 886
Score = 28.3 bits (60), Expect = 8.6
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +2
Query: 488 SHLRPNGR-LRSSACIRGSTRAPVPSALNGASPHQYRMVRVTRASPCPARRDHVQTSEHL 664
S+ P G+ L S G+T A V S NG +P ++ +R+SP +R +VQ E +
Sbjct: 253 SYRLPTGKPLDGSLKSSGNTSASVVSQSNGGAPVGPKVKASSRSSP-DSRATNVQGREDI 311
Query: 665 SE 670
S+
Sbjct: 312 SK 313
>02_04_0206 + 20916063-20919669,20919816-20920014,20920935-20921074,
20921184-20921263,20922759-20922875,20923089-20923136,
20923509-20923601,20923881-20923958,20924114-20924218,
20924543-20925212,20925253-20925350,20925887-20925963,
20926035-20926117,20926208-20926287,20927060-20927139,
20927698-20927743,20928709-20929181,20929234-20929579
Length = 2139
Score = 28.3 bits (60), Expect = 8.6
Identities = 21/75 (28%), Positives = 37/75 (49%)
Frame = +2
Query: 476 ALSNSHLRPNGRLRSSACIRGSTRAPVPSALNGASPHQYRMVRVTRASPCPARRDHVQTS 655
AL NS PNG +++ C+ G+ + S+L Q+ + VT+ + CP H +
Sbjct: 895 ALFNS---PNGAHKAAQCVEGNHTLKLTSSL--TDTQQFGLENVTQET-CPG-YIHGECG 947
Query: 656 EHLSEQCINAAINFN 700
SE+ +N + F+
Sbjct: 948 TSTSERSLNNIVGFS 962
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,186,652
Number of Sequences: 37544
Number of extensions: 459397
Number of successful extensions: 1402
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1401
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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