Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP22_F_F15
(908 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968... 31 1.7
06_03_0218 + 18219956-18220555 31 1.7
09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254 29 5.1
08_01_0156 - 1233431-1233925 29 6.7
06_02_0194 + 12885340-12885708,12886098-12886367,12886476-128865... 29 6.7
10_07_0162 - 13713504-13714754,13716445-13716522 28 8.9
03_06_0149 - 31987183-31987630,31987813-31987874 28 8.9
03_04_0061 - 16949038-16950006 28 8.9
01_01_0362 - 2843659-2844468,2844669-2844699,2844824-2844903,284... 28 8.9
>06_03_0833 -
25196091-25196372,25196464-25196565,25196640-25196838,
25196978-25197278,25197471-25197645,25197842-25198012,
25198207-25198239
Length = 420
Score = 30.7 bits (66), Expect = 1.7
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = +3
Query: 171 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 329
CWR + T D Q + +KD P + PSC L+F P P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335
>06_03_0218 + 18219956-18220555
Length = 199
Score = 30.7 bits (66), Expect = 1.7
Identities = 21/62 (33%), Positives = 26/62 (41%)
Frame = -2
Query: 448 GGFVHTAQLGANDLHRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKRL 269
GG ++ A +T P R R R E G + KR+GR R G RGKR
Sbjct: 82 GGLTEGEEVAARPREKTARPDG--ARARRERRLEAAG--AEKREGRRRGGSSGGLRGKRR 137
Query: 268 VS 263
S
Sbjct: 138 AS 139
>09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254
Length = 425
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 650 QQSADTKYCSSSVAVVRPPLQELCSTAYIPRSA 552
Q S K SSVA PP + L ST +PR++
Sbjct: 176 QNSIAAKLACSSVAAASPPPRNLVSTTPVPRNS 208
Score = 28.7 bits (61), Expect = 6.7
Identities = 24/71 (33%), Positives = 30/71 (42%)
Frame = -1
Query: 749 RNLLLANKKTTATSGGLFAGSRATNSFSEGNWLQQSADTKYCSSSVAVVRPPLQELCSTA 570
RN + AN A+S A N S S SSSVA PP + L ST
Sbjct: 206 RNSITAN---LASSSVAAASPPPRNLVSTTPVPHNSIAANLASSSVAAASPPPRNLVSTT 262
Query: 569 YIPRSANPVTS 537
+PR NP+ +
Sbjct: 263 PVPR--NPIAA 271
>08_01_0156 - 1233431-1233925
Length = 164
Score = 28.7 bits (61), Expect = 6.7
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = -2
Query: 424 LGANDLHRTEIPTA*AMRKRHASRREK--GGQVSGKRQGRNRRAHEGASRGKRLVSL*SC 251
LG D TE+ A A A+R E+ GG G R G RA + +G +
Sbjct: 89 LGDADATATEVDAAAAAEAEAAARGERGDGGGDGGGRAGGRGRARDEREKGAAADRVLGV 148
Query: 250 RVSPPLT 230
R SP ++
Sbjct: 149 RASPTVS 155
>06_02_0194 +
12885340-12885708,12886098-12886367,12886476-12886592,
12888044-12888094,12889599-12889719,12890146-12890311,
12890598-12890691
Length = 395
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Frame = -2
Query: 739 CLRTKKPPLPAVVC-----LPDQELPTLFPKVTGFSRAQIPNTVLL 617
CL ++PP PA +C LPD + T+ + F R VLL
Sbjct: 46 CLALRRPPPPAELCVLLNDLPDNDFATVVKSLVEFRRNNGDEPVLL 91
>10_07_0162 - 13713504-13714754,13716445-13716522
Length = 442
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 399 VRCRSFAPSWAVCTNPPVQPDRCALSGNYRLESNPVRHDLSP 524
V R F P +C P V+P++C G+ R E + + L P
Sbjct: 44 VDARKFVPGAKMCMQPDVKPNKCKSRGS-RKERSRTQAPLLP 84
>03_06_0149 - 31987183-31987630,31987813-31987874
Length = 169
Score = 28.3 bits (60), Expect = 8.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 379 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRG 278
A+ + H R + + +R+GR R AHEG G
Sbjct: 76 AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIG 109
>03_04_0061 - 16949038-16950006
Length = 322
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 253 RTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGA 369
RT+K PG+ ++PRA+ + P Y VR + +R A
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSA 293
>01_01_0362 -
2843659-2844468,2844669-2844699,2844824-2844903,
2846680-2847831
Length = 690
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -2
Query: 142 LLAFCSHVLSCSYPLILWITVLPPLSELIPHQNLKEFPIVXS 17
L+ CSH+L P+ VLPPL+ H+ L + I+ S
Sbjct: 138 LMIACSHLLGVCNPITGECHVLPPLNLSGLHRYLTSYAIITS 179
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,202,980
Number of Sequences: 37544
Number of extensions: 642475
Number of successful extensions: 2039
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2037
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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