Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP22_F_F13
(844 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42845-1|AAA83599.1| 196|Caenorhabditis elegans Ribosomal prote... 66 4e-11
U64844-3|AAB18306.1| 196|Caenorhabditis elegans Ribosomal prote... 65 5e-11
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 32 0.59
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 29 3.1
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 4.1
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 4.1
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 29 4.1
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 4.1
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 28 9.5
U58758-7|AAO38576.1| 220|Caenorhabditis elegans Hypothetical pr... 28 9.5
U58758-4|AAK68614.1| 914|Caenorhabditis elegans Hypothetical pr... 28 9.5
U58758-3|AAK68615.1| 905|Caenorhabditis elegans Hypothetical pr... 28 9.5
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 28 9.5
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 28 9.5
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 28 9.5
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 28 9.5
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 28 9.5
>U42845-1|AAA83599.1| 196|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 11.2 protein.
Length = 196
Score = 65.7 bits (153), Expect = 4e-11
Identities = 30/35 (85%), Positives = 33/35 (94%)
Frame = +1
Query: 145 SKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQ 249
++NVMR L I+KLCLNICVGESGDRLTRAAKVLEQ
Sbjct: 15 ARNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQ 49
>U64844-3|AAB18306.1| 196|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 11.1 protein.
Length = 196
Score = 65.3 bits (152), Expect = 5e-11
Identities = 30/34 (88%), Positives = 32/34 (94%)
Frame = +1
Query: 148 KNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQ 249
+NVMR L I+KLCLNICVGESGDRLTRAAKVLEQ
Sbjct: 16 RNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQ 49
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 31.9 bits (69), Expect = 0.59
Identities = 15/51 (29%), Positives = 15/51 (29%)
Frame = +3
Query: 672 PXXXPXXXXXPXXXXPPXXXPXXXXPPXPXXPPXPPXXXXXXXXPXXXXXP 824
P P P PP P PP P PP PP P P
Sbjct: 32 PPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPMP 82
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/39 (33%), Positives = 13/39 (33%)
Frame = +3
Query: 717 PPXXXPXXXXPPXPXXPPXPPXXXXXXXXPXXXXXPXPP 833
PP P PP P PP PP P P P
Sbjct: 56 PPPPCPAQFCPPPPICPPPPPPPMPCPPPPPPMPRPSCP 94
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/36 (33%), Positives = 12/36 (33%)
Frame = +3
Query: 672 PXXXPXXXXXPXXXXPPXXXPXXXXPPXPXXPPXPP 779
P P PP P PP P PP PP
Sbjct: 52 PVCPPPPPCPAQFCPPPPICPPPPPPPMPCPPPPPP 87
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/50 (28%), Positives = 14/50 (28%)
Frame = +3
Query: 684 PXXXXXPXXXXPPXXXPXXXXPPXPXXPPXPPXXXXXXXXPXXXXXPXPP 833
P P PP P PP PP PP P PP
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 764
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/54 (29%), Positives = 16/54 (29%)
Frame = +3
Query: 672 PXXXPXXXXXPXXXXPPXXXPXXXXPPXPXXPPXPPXXXXXXXXPXXXXXPXPP 833
P P P PP P PP PP PP P P PP
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP---PPPPPP 777
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/50 (28%), Positives = 14/50 (28%)
Frame = +3
Query: 684 PXXXXXPXXXXPPXXXPXXXXPPXPXXPPXPPXXXXXXXXPXXXXXPXPP 833
P P PP P PP PP PP P PP
Sbjct: 715 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 764
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/54 (29%), Positives = 16/54 (29%)
Frame = +3
Query: 672 PXXXPXXXXXPXXXXPPXXXPXXXXPPXPXXPPXPPXXXXXXXXPXXXXXPXPP 833
P P P PP P PP PP PP P P PP
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP---PPPPPP 777
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 702 PXXXXPPXXXPXXXXPPXPXXPPXPP 779
P PP P PP P PP PP
Sbjct: 498 PPPPLPPIATPSSVPPPPPPPPPPPP 523
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/50 (28%), Positives = 14/50 (28%)
Frame = +3
Query: 684 PXXXXXPXXXXPPXXXPXXXXPPXPXXPPXPPXXXXXXXXPXXXXXPXPP 833
P P PP P PP PP PP P PP
Sbjct: 298 PPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPP 347
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/54 (29%), Positives = 16/54 (29%)
Frame = +3
Query: 672 PXXXPXXXXXPXXXXPPXXXPXXXXPPXPXXPPXPPXXXXXXXXPXXXXXPXPP 833
P P P PP P PP PP PP P P PP
Sbjct: 310 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPP---PPPPPP 360
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical
protein Y48E1B.1 protein.
Length = 497
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/36 (33%), Positives = 12/36 (33%)
Frame = +3
Query: 672 PXXXPXXXXXPXXXXPPXXXPXXXXPPXPXXPPXPP 779
P P PP P PP P PP PP
Sbjct: 334 PSPQPAATPVEITEIPPIISPPAPPPPPPPPPPPPP 369
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/48 (31%), Positives = 15/48 (31%), Gaps = 4/48 (8%)
Frame = +3
Query: 702 PXXXXPPXXXPXXXXPPXPXX----PPXPPXXXXXXXXPXXXXXPXPP 833
P PP P PP P PP PP P P PP
Sbjct: 70 PNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPP 117
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical
protein T05A1.2 protein.
Length = 300
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = +3
Query: 747 PPXPXXPPXPPXXXXXXXXPXXXXXPXPP 833
PP P PP PP P P PP
Sbjct: 144 PPCPACPPGPPGAPGAPGKPGSEGPPGPP 172
>U58758-7|AAO38576.1| 220|Caenorhabditis elegans Hypothetical
protein ZK1127.9d protein.
Length = 220
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 276 GPPLGXLXFFXXPPXKKXGRGGP 344
GPP G FF PP + GRGGP
Sbjct: 42 GPPGGAGSFFGVPPAAR-GRGGP 63
>U58758-4|AAK68614.1| 914|Caenorhabditis elegans Hypothetical
protein ZK1127.9a protein.
Length = 914
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 276 GPPLGXLXFFXXPPXKKXGRGGP 344
GPP G FF PP + GRGGP
Sbjct: 51 GPPGGAGSFFGVPPAAR-GRGGP 72
>U58758-3|AAK68615.1| 905|Caenorhabditis elegans Hypothetical
protein ZK1127.9b protein.
Length = 905
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 276 GPPLGXLXFFXXPPXKKXGRGGP 344
GPP G FF PP + GRGGP
Sbjct: 42 GPPGGAGSFFGVPPAAR-GRGGP 63
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 717 PPXXXPXXXXPPXPXXPPXPP 779
PP P PP P PP PP
Sbjct: 142 PPPCKPCPQGPPGPPGPPGPP 162
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 717 PPXXXPXXXXPPXPXXPPXPP 779
PP P PP P PP PP
Sbjct: 133 PPPPPPPHYPPPPPHYPPPPP 153
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 717 PPXXXPXXXXPPXPXXPPXPP 779
PP P PP P PP PP
Sbjct: 142 PPPWKPCPQGPPGPPGPPGPP 162
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 717 PPXXXPXXXXPPXPXXPPXPP 779
PP P PP P PP PP
Sbjct: 142 PPPCKPCPQGPPGPPGPPGPP 162
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/44 (29%), Positives = 13/44 (29%)
Frame = +3
Query: 702 PXXXXPPXXXPXXXXPPXPXXPPXPPXXXXXXXXPXXXXXPXPP 833
P PP P P P PP PP P PP
Sbjct: 1338 PPPPPPPPPPPSDDLTPVPPPPPPPPTMSKAPTGVPLPVPPPPP 1381
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,748,847
Number of Sequences: 27780
Number of extensions: 152851
Number of successful extensions: 740
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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