Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_F02
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   217   2e-57
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    29   0.87 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   2.0  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    27   4.7  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  217 bits (529), Expect = 2e-57
 Identities = 93/128 (72%), Positives = 117/128 (91%)
 Frame = +1

Query: 220 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 399
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIKE++I+D+FL P LNDEV+K++PVQ
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQ 86

Query: 400 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 579
           KQTRAGQRTRFKAFV IGD++GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG  
Sbjct: 87  KQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTA 146

Query: 580 IGKPHTVP 603
           +G PHTVP
Sbjct: 147 LGDPHTVP 154



 Score = 95.5 bits (227), Expect = 9e-21
 Identities = 42/68 (61%), Positives = 54/68 (79%)
 Frame = +2

Query: 569 GVTRSESHTPSLGKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGS 748
           G    + HT  + KV+GKCGSVTVRL+PAPRG G+V+APV K+ LQ+AG++DCYT +RGS
Sbjct: 144 GTALGDPHTVPV-KVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGS 202

Query: 749 TGTLGKFL 772
           T TLG F+
Sbjct: 203 TKTLGNFV 210


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +3

Query: 693 RSFFRWLVYRTATPQLVVQL 752
           RS F+WL+  TATP+L+V L
Sbjct: 69  RSVFQWLIALTATPRLLVLL 88


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 217 RAHDHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 92
           ++HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 21  HYREFLKILIFCCLTVY 71
           H+R F+++ +FC LT Y
Sbjct: 472 HFRLFIRLALFCVLTTY 488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,615,335
Number of Sequences: 5004
Number of extensions: 77527
Number of successful extensions: 214
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)