Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP22_F_E19
(876 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 42 9e-05
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 42 1e-04
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 42 1e-04
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 42 2e-04
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 38 0.001
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 38 0.002
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 36 0.006
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 36 0.006
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 36 0.008
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 36 0.008
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 36 0.008
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 34 0.023
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 34 0.031
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 33 0.040
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 33 0.071
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 33 0.071
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 32 0.093
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 32 0.093
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 31 0.16
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 31 0.22
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 31 0.22
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 30 0.38
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 30 0.50
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 30 0.50
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 29 0.66
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 29 0.87
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 28 1.5
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 28 2.0
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 26 6.1
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 6.1
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 26 8.1
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 26 8.1
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 42.3 bits (95), Expect = 9e-05
Identities = 23/71 (32%), Positives = 36/71 (50%)
Frame = +2
Query: 215 DCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAXVEFEDPRDAEDAVRGLDG 394
+ +++VG + A++ ++ D F YG + + + GF VE ED RDA D V G
Sbjct: 3 ETRLFVGRIPPQATREDMMDFFKGYGQILDCKLMN---GFGFVEVEDARDARDIVNDFQG 59
Query: 395 RTICGRRARVE 427
+ G R VE
Sbjct: 60 KEFMGSRIVVE 70
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 41.9 bits (94), Expect = 1e-04
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Frame = +2
Query: 221 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAXVEFEDPRDAEDAVRG 385
K+Y+ +L N + ++ + +G L + + +N GF EF++P DAE A+ G
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISG 370
Query: 386 LDGRTICGRRARVEMS 433
LDG+ G + + +
Sbjct: 371 LDGKDTYGNKLHAQFA 386
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 41.9 bits (94), Expect = 1e-04
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = +2
Query: 218 CKVYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAXVEFEDPRDAEDAVR 382
C VYVG++ ++ ++ D F GP+++ + + P G+ E+ DP A AVR
Sbjct: 5 CVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVR 64
Query: 383 GLDGRTICGRRARVE 427
L+ RR RV+
Sbjct: 65 NLNNYDAGTRRLRVD 79
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 41.5 bits (93), Expect = 2e-04
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Frame = +2
Query: 224 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG----FAXVEFEDPRDAEDAVRGLD 391
V+VG+L + ++ L +AF +G + +V + R +A VEF++P DA++A+ ++
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
Query: 392 GRTICGRRARVEMSN 436
+C R RV +N
Sbjct: 68 YSILCDRCIRVSPAN 82
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 38.3 bits (85), Expect = 0.001
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Frame = +2
Query: 182 QKASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN---------PPGF 334
+++++ + D +V+VG L + K E+ F G +R V + P G
Sbjct: 32 EQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGI 91
Query: 335 AXVEFEDPRDAEDAVRGLDGRTICGRRARVE 427
A V F + D + A+ L+G+T+ R V+
Sbjct: 92 AFVTFNNQEDVDKAIETLNGKTLDDREIVVQ 122
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 37.9 bits (84), Expect = 0.002
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Frame = +2
Query: 224 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAXVEFEDPRDAEDAVRGL 388
+++ L + + ++E F+ YGP+ + V RN G+A V FE RD + A +
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 389 DGRTICGRRARVEM 430
G + GRR V++
Sbjct: 162 AGLMLNGRRIVVDV 175
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 36.3 bits (80), Expect = 0.006
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Frame = +2
Query: 224 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAXVEFEDPRDAEDAVRGL 388
+YVG+L + ++ L + F+ GP+ ++ V R+ G+A V F + D E A+ L
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 389 DGRTICGRRARVEMS 433
+ I GR R+ S
Sbjct: 142 NYTLIKGRPCRIMWS 156
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 36.3 bits (80), Expect = 0.006
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = +2
Query: 200 MSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWV----ARNPPGFAXVEFEDPRDA 367
MSR +YV + EL F +GPL + R FA VE+ED RDA
Sbjct: 1 MSRRSLRTLYVTGFRDGMRARELAYEFEPFGPLIRCDIPIPRTRTSRPFAFVEYEDSRDA 60
Query: 368 EDAVRGLDGRTI 403
EDA + GR +
Sbjct: 61 EDAYYEVHGRRL 72
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 35.9 bits (79), Expect = 0.008
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Frame = +2
Query: 218 CKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAXVEFEDPRDAEDAVR 382
C V+VG L N L F YG + V + G+ V+FE P A+ AV
Sbjct: 263 CTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVA 322
Query: 383 GLDGRTICGRRARVEMSN 436
+ I GR +++SN
Sbjct: 323 ANGTKEIDGRMVNLDLSN 340
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 35.9 bits (79), Expect = 0.008
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = +2
Query: 215 DCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPG----FAXVEFEDPRDAEDAVR 382
DC +YVG+L S L D F+ G + +A P G F V+FE+ DA ++
Sbjct: 280 DC-IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIE 338
Query: 383 GLDGRTICGR 412
L+G GR
Sbjct: 339 KLNGYRYGGR 348
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 35.9 bits (79), Expect = 0.008
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Frame = +2
Query: 221 KVYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAXVEFEDPRDAEDAVRG 385
++++ +L + ++ +L+ F +G L V + NP GFA ++F D DA A
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 386 LDGRTICGRRARV 424
LD + GR V
Sbjct: 384 LDAKPFQGRLLHV 396
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 329 GFAXVEFEDPRDAEDAVRGLDGRTICGRRARVEMSN 436
GF VEF+D A A+ ++G + G + +++S+
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSH 701
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 34.3 bits (75), Expect = 0.023
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +2
Query: 224 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAXVEFEDPRDAEDAVRGL 388
V+VG++ + S+ ++ + F+ GP++ + +P G+ EF D AVR L
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 389 DGRTICGRRARVE 427
+ + R+ RVE
Sbjct: 69 NNSELGPRKIRVE 81
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 33.9 bits (74), Expect = 0.031
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +2
Query: 221 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN----PPGFAXVEFEDPRDAEDAVRGL 388
+++VG+LGN+ + L AFS Y L V R+ GF V F+D A R
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREK 90
Query: 389 DGRTICGRRARV 424
+G+ I R ++
Sbjct: 91 NGKYIGSRPVKL 102
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 33.5 bits (73), Expect = 0.040
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Frame = +2
Query: 224 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAXVEFEDPRDAEDAVRGL 388
++V +L + +L + FS GP+++ V NP G+ V F DA+ A + L
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 389 DGRTICGRRARVEMS 433
+ + GR R++ +
Sbjct: 67 KNKKLHGRILRLDFA 81
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 32.7 bits (71), Expect = 0.071
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Frame = +2
Query: 224 VYVGDLGNNASKPEL----EDAFSYYGPLRNVWVARN--PPGFAXVEFEDPRDAEDAVRG 385
++V L ++ S+ EL +D F +GPL +V V ++ ++ V+F++ DA A+
Sbjct: 81 LFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKDWLQRPYSFVQFQNTDDASKALSE 140
Query: 386 LDGRTICGRRARVE 427
+ GR R+E
Sbjct: 141 AQNTILDGRHIRIE 154
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 32.7 bits (71), Expect = 0.071
Identities = 17/55 (30%), Positives = 32/55 (58%)
Frame = +2
Query: 224 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAXVEFEDPRDAEDAVRGL 388
V++G+L ++ + E+E+AF +G + ++ + + A V F + RDA VR L
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKIL-SKKNIAFVHFLNIRDAIKVVRTL 354
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 32.3 bits (70), Expect = 0.093
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Frame = +2
Query: 224 VYVGDLGNNASKPELEDAFSYYGPLRNVWVA-----RNPPGFAXVEFEDPRDAEDAVRGL 388
VYVG+L ++ ++ FS G +R + + + P GF VE+ + +DA D+++ +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 389 DGRTICGRRARVEMSN 436
++ R R ++ +
Sbjct: 94 SRTSLDERIIRADLDH 109
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 32.3 bits (70), Expect = 0.093
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 329 GFAXVEFEDPRDAEDAVRGLDGRTICGRRARVE 427
G A F P +A+ V+ L+G I GRR RVE
Sbjct: 274 GLAFANFHSPEEAKTVVQVLNGYEITGRRLRVE 306
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 31.5 bits (68), Expect = 0.16
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Frame = +2
Query: 224 VYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAXVEFEDPRDAEDAVRGL 388
VYVG++ + + EL+ F+ G + V + +P GFA +EF +P +A+ L
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALL-L 115
Query: 389 DGRTICGRRARV 424
+G + R +V
Sbjct: 116 NGSMLHERPLKV 127
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 31.1 bits (67), Expect = 0.22
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 509 CYDCGDRGHYARDC 550
CY+CG+ GH AR+C
Sbjct: 19 CYNCGENGHQAREC 32
Score = 29.9 bits (64), Expect = 0.50
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 509 CYDCGDRGHYARDC 550
CY CG GH ARDC
Sbjct: 118 CYACGSYGHQARDC 131
Score = 29.1 bits (62), Expect = 0.87
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +2
Query: 509 CYDCGDRGHYARDC 550
CY CG GH ARDC
Sbjct: 85 CYKCGRVGHIARDC 98
Score = 28.3 bits (60), Expect = 1.5
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2
Query: 509 CYDCGDRGHYARDC 550
CY CG GH RDC
Sbjct: 60 CYACGTAGHLVRDC 73
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 31.1 bits (67), Expect = 0.22
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -2
Query: 359 VDLRIQXMRSLEDFLQPTHSSV-DHNMKRHLQVQVY*HYSPNLQHKLCSHHS 207
+D + +R+ D LQ H ++ DHN Q+Q+Y Y N + ++ HS
Sbjct: 595 LDALYERIRAERDALQDVHRAICDHNEYLQTQLQIYGSYLNNARSQIKPSHS 646
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 30.3 bits (65), Expect = 0.38
Identities = 22/69 (31%), Positives = 29/69 (42%)
Frame = +2
Query: 230 VGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAXVEFEDPRDAEDAVRGLDGRTICG 409
V ++ ++ L F YG L V + G A VEF D DA A L+G I G
Sbjct: 878 VTNVDGTVNEARLRSLFESYGKLYRVVLHPEHEG-AVVEFLDIHDAGKASLALEGHEIGG 936
Query: 410 RRARVEMSN 436
R + N
Sbjct: 937 RLLHITTVN 945
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 29.9 bits (64), Expect = 0.50
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +2
Query: 329 GFAXVEFEDPRDAEDAVRGLDGRTICGRRARVE 427
G A F P +A+ V+ L+G I GRR RVE
Sbjct: 244 GLAFANFYRPEEAQVVVQTLNGYEINGRRLRVE 276
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 29.9 bits (64), Expect = 0.50
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Frame = +2
Query: 188 ASSTMSRYGDCK-VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAXVEF 349
+SS Y D +Y+G+L + ++ ++ FS +G ++ + R+ GFA +++
Sbjct: 20 SSSWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKY 79
Query: 350 EDPRDAEDAVRGLDGRTICGRRARVE 427
ED R AV + + R RV+
Sbjct: 80 EDQRSTVLAVDNMTNVKLLDRLVRVD 105
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 29.5 bits (63), Expect = 0.66
Identities = 18/69 (26%), Positives = 31/69 (44%)
Frame = +2
Query: 224 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAXVEFEDPRDAEDAVRGLDGRTI 403
+YV +L S + FS YG ++++W+ +P A V +E A A L R +
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWML-SPDNSAIVSYESLSSAIVARDALHNRPV 60
Query: 404 CGRRARVEM 430
V++
Sbjct: 61 FENHGPVQV 69
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 29.1 bits (62), Expect = 0.87
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +2
Query: 269 EDAFSYYGPLRNVWVARNPPGFAXVEFEDPRDAEDAVRGLDGRTICGRRARVEM 430
E+ YG + ++ V N G V+FE+ AE A+ GL R GR + +
Sbjct: 535 EECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKAITGLHQRWFGGRTIKASI 588
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 28.3 bits (60), Expect = 1.5
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Frame = +2
Query: 206 RYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVAR-----NPPGFAXVEFEDPRDAE 370
R D +Y+G+L + L + GP+ N+ + R + GF EF +D E
Sbjct: 7 RNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVE 66
Query: 371 DAVRGLDGRTICGRRARVEMSN 436
A + L+ + G+ RV ++
Sbjct: 67 YACQILNQVKLFGKPIRVNRAS 88
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 27.9 bits (59), Expect = 2.0
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Frame = +2
Query: 173 LTIQKASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFA 337
L + S M + V+VG+L A + L F G + V + R+P GFA
Sbjct: 255 LRVDSVSHPMPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFA 314
Query: 338 XVEFEDPRDAEDAVRGLDGRTICGRRARV 424
++F+D + A+ + + GR R+
Sbjct: 315 YIQFKDTMGVDKALLLNEKKMPEGRTLRI 343
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 26.2 bits (55), Expect = 6.1
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 242 GNNASKPELEDAFSYYGPLRNVWVARNPPGFAXV-EFEDPRDAEDAVRGLDGRTI 403
G+ S +L+ +GPL + R+ + EF D RDA A+ LDGR I
Sbjct: 300 GSVLSILQLQSILQTFGPLLIMKPLRSQNVSQIICEFYDTRDASFALDELDGRII 354
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2
Query: 509 CYDCGDRGHYARDC 550
C CG GH ARDC
Sbjct: 336 CRHCGSIGHIARDC 349
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 25.8 bits (54), Expect = 8.1
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +2
Query: 509 CYDCGDRGHYARDC 550
CY CG +GH+ + C
Sbjct: 185 CYRCGQKGHWIQAC 198
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 25.8 bits (54), Expect = 8.1
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +2
Query: 224 VYVGDLGNNASKPELEDAFSYYGPLRNVW--VARNPPGFAXVEFEDPRDAEDAVRGLDGR 397
+YVG+L N + +L AFS R + + N P VEFE+ A A+ + G
Sbjct: 604 IYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKIKGNSP-MCFVEFEEVCHAAKAMEKMQGA 662
Query: 398 TI 403
+
Sbjct: 663 AL 664
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,791,396
Number of Sequences: 5004
Number of extensions: 49772
Number of successful extensions: 149
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -