Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP22_F_E19
(876 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 102 3e-22
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 102 3e-22
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 102 3e-22
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 71 1e-12
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 71 1e-12
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 62 7e-10
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 61 9e-10
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 58 1e-08
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 58 1e-08
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 58 1e-08
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 53 3e-07
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 53 3e-07
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 53 3e-07
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 51 9e-07
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 51 9e-07
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 46 5e-05
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 45 6e-05
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 45 6e-05
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 43 3e-04
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 43 3e-04
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 43 3e-04
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 43 3e-04
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 42 6e-04
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 42 6e-04
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 41 0.001
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 41 0.001
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 41 0.001
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 41 0.001
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 41 0.001
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 41 0.001
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 40 0.003
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 39 0.005
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 39 0.005
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 37 0.016
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 37 0.016
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 37 0.016
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 37 0.016
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 37 0.022
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 37 0.022
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 37 0.022
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 36 0.029
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 36 0.029
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 36 0.050
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 36 0.050
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 36 0.050
AC024793-5|AAF60689.1| 79|Caenorhabditis elegans Hypothetical ... 36 0.050
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 36 0.050
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 35 0.088
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 35 0.088
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 35 0.088
AC024844-6|AAK29956.1| 442|Caenorhabditis elegans Hypothetical ... 35 0.088
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 34 0.12
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 34 0.12
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 34 0.12
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 34 0.12
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 34 0.12
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 34 0.12
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 33 0.20
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 33 0.35
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 32 0.47
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 32 0.47
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 31 0.82
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 31 1.1
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 31 1.4
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 31 1.4
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 31 1.4
Z69664-10|CAC42313.1| 1311|Caenorhabditis elegans Hypothetical p... 29 3.3
Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z68880-11|CAC42342.1| 1311|Caenorhabditis elegans Hypothetical p... 29 3.3
Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical p... 29 3.3
AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C... 29 3.3
AF308448-1|AAL09434.1| 1311|Caenorhabditis elegans PXF isoform B... 29 3.3
AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A... 29 3.3
AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein. 29 3.3
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical pr... 29 4.4
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 29 4.4
AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical... 29 4.4
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 29 5.8
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 29 5.8
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 29 5.8
AF016665-4|AAC71180.1| 347|Caenorhabditis elegans Nuclear hormo... 29 5.8
AF016654-7|AAB66029.2| 324|Caenorhabditis elegans Nuclear hormo... 29 5.8
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 102 bits (245), Expect = 3e-22
Identities = 47/73 (64%), Positives = 56/73 (76%)
Frame = +2
Query: 215 DCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAXVEFEDPRDAEDAVRGLDG 394
D KVYVG L ++A+ ELE+ F +G +R VWVAR PPGFA VE++D RDAEDAVR LDG
Sbjct: 2 DAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDG 61
Query: 395 RTICGRRARVEMS 433
ICG RARVE+S
Sbjct: 62 SRICGVRARVELS 74
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 102 bits (245), Expect = 3e-22
Identities = 47/73 (64%), Positives = 56/73 (76%)
Frame = +2
Query: 215 DCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAXVEFEDPRDAEDAVRGLDG 394
D KVYVG L ++A+ ELE+ F +G +R VWVAR PPGFA VE++D RDAEDAVR LDG
Sbjct: 2 DAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDG 61
Query: 395 RTICGRRARVEMS 433
ICG RARVE+S
Sbjct: 62 SRICGVRARVELS 74
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 102 bits (245), Expect = 3e-22
Identities = 47/73 (64%), Positives = 56/73 (76%)
Frame = +2
Query: 215 DCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAXVEFEDPRDAEDAVRGLDG 394
D KVYVG L ++A+ ELE+ F +G +R VWVAR PPGFA VE++D RDAEDAVR LDG
Sbjct: 2 DAKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDG 61
Query: 395 RTICGRRARVEMS 433
ICG RARVE+S
Sbjct: 62 SRICGVRARVELS 74
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 70.9 bits (166), Expect = 1e-12
Identities = 38/74 (51%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Frame = +2
Query: 215 DCKVYVGDLGNNASKPELEDAFSYYGPLRNVWV-ARNPPGFAXVEFEDPRDAEDAVRGLD 391
D KVYVG+L + + E+ED F YG ++ V + + P FA VEFED RDAEDAVR D
Sbjct: 8 DQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARD 67
Query: 392 GRTICGRRARVEMS 433
G GRR RVE +
Sbjct: 68 GYEFDGRRIRVEFT 81
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 70.9 bits (166), Expect = 1e-12
Identities = 38/74 (51%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Frame = +2
Query: 215 DCKVYVGDLGNNASKPELEDAFSYYGPLRNVWV-ARNPPGFAXVEFEDPRDAEDAVRGLD 391
D KVYVG+L + + E+ED F YG ++ V + + P FA VEFED RDAEDAVR D
Sbjct: 8 DQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARD 67
Query: 392 GRTICGRRARVEMS 433
G GRR RVE +
Sbjct: 68 GYEFDGRRIRVEFT 81
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 61.7 bits (143), Expect = 7e-10
Identities = 31/69 (44%), Positives = 45/69 (65%)
Frame = +2
Query: 221 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAXVEFEDPRDAEDAVRGLDGRT 400
+VY+G L N AS ++E F YG L +V + +N GF V+F+D RDA+DAV L+G+
Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDV-IMKN--GFGFVDFQDQRDADDAVHDLNGKE 59
Query: 401 ICGRRARVE 427
+CG R +E
Sbjct: 60 LCGERVILE 68
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 61.3 bits (142), Expect = 9e-10
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 11/81 (13%)
Frame = +2
Query: 221 KVYVGDLGNNASKPEL-----------EDAFSYYGPLRNVWVARNPPGFAXVEFEDPRDA 367
+VYVG++ +A++ EL E FS GP++++W+A+ PPGFA V F+ A
Sbjct: 18 QVYVGNMPFDATEKELNNDALTIYDAIEAVFSVMGPIKSIWMAKRPPGFAFVTFKRTVHA 77
Query: 368 EDAVRGLDGRTICGRRARVEM 430
DAV+ L+G+ IC A+VEM
Sbjct: 78 FDAVKYLNGKKICDLEAKVEM 98
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 57.6 bits (133), Expect = 1e-08
Identities = 29/71 (40%), Positives = 46/71 (64%)
Frame = +2
Query: 221 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAXVEFEDPRDAEDAVRGLDGRT 400
++Y+G L + S+ ++E F YG +R+V + +N GF VEF+D RDAEDAV L+G+
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV-LLKN--GFGFVEFDDKRDAEDAVHDLNGKE 60
Query: 401 ICGRRARVEMS 433
+ G R ++ S
Sbjct: 61 LGGERVILDYS 71
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 57.6 bits (133), Expect = 1e-08
Identities = 29/71 (40%), Positives = 46/71 (64%)
Frame = +2
Query: 221 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAXVEFEDPRDAEDAVRGLDGRT 400
++Y+G L + S+ ++E F YG +R+V + +N GF VEF+D RDAEDAV L+G+
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV-LLKN--GFGFVEFDDKRDAEDAVHDLNGKE 60
Query: 401 ICGRRARVEMS 433
+ G R ++ S
Sbjct: 61 LGGERVILDYS 71
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 57.6 bits (133), Expect = 1e-08
Identities = 29/71 (40%), Positives = 46/71 (64%)
Frame = +2
Query: 221 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAXVEFEDPRDAEDAVRGLDGRT 400
++Y+G L + S+ ++E F YG +R+V + +N GF VEF+D RDAEDAV L+G+
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYGQIRDV-LLKN--GFGFVEFDDKRDAEDAVHDLNGKE 60
Query: 401 ICGRRARVEMS 433
+ G R ++ S
Sbjct: 61 LGGERVILDYS 71
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 52.8 bits (121), Expect = 3e-07
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Frame = +2
Query: 221 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAXVEFEDPRDAEDAVRGLDGRT 400
++Y+G + NA + ++E YG + N+ + GFA V+FED RDAEDA LDG+T
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDLDGKT 59
Query: 401 ICGRRAR--VEMS 433
+ G R VEM+
Sbjct: 60 MEGSSMRLVVEMA 72
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 52.8 bits (121), Expect = 3e-07
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Frame = +2
Query: 221 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAXVEFEDPRDAEDAVRGLDGRT 400
++Y+G + NA + ++E YG + N+ + GFA V+FED RDAEDA LDG+T
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDLDGKT 59
Query: 401 ICGRRAR--VEMS 433
+ G R VEM+
Sbjct: 60 MEGSSMRLVVEMA 72
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 52.8 bits (121), Expect = 3e-07
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Frame = +2
Query: 221 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAXVEFEDPRDAEDAVRGLDGRT 400
++Y+G + NA + ++E YG + N+ + GFA V+FED RDAEDA LDG+T
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDLDGKT 59
Query: 401 ICGRRAR--VEMS 433
+ G R VEM+
Sbjct: 60 MEGSSMRLVVEMA 72
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 51.2 bits (117), Expect = 9e-07
Identities = 25/74 (33%), Positives = 42/74 (56%)
Frame = +2
Query: 212 GDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAXVEFEDPRDAEDAVRGLD 391
G C+++VG+L N + EL++ FS +G + +++ GFA + + AE A +D
Sbjct: 114 GRCRLFVGNLPNEVKETELKELFSPHGDIAECYLSGK--GFAFLRLDTRAHAESAKEAID 171
Query: 392 GRTICGRRARVEMS 433
GR I GR+ RV +
Sbjct: 172 GRIIHGRQVRVRFA 185
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 51.2 bits (117), Expect = 9e-07
Identities = 25/74 (33%), Positives = 42/74 (56%)
Frame = +2
Query: 212 GDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAXVEFEDPRDAEDAVRGLD 391
G C+++VG+L N + EL++ FS +G + +++ GFA + + AE A +D
Sbjct: 114 GRCRLFVGNLPNEVKETELKELFSPHGDIAECYLSGK--GFAFLRLDTRAHAESAKEAID 171
Query: 392 GRTICGRRARVEMS 433
GR I GR+ RV +
Sbjct: 172 GRIIHGRQVRVRFA 185
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 45.6 bits (103), Expect = 5e-05
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Frame = +2
Query: 221 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP------PGFAXVEFEDPRDAEDAVR 382
+V + +L N K LE+ FS YG ++NV + + G+ VE+++ DAE +++
Sbjct: 134 RVVIKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDAEKSIK 193
Query: 383 GLDGRTICGRRARVEMS 433
+DG I G VEM+
Sbjct: 194 HMDGGQIDGMAVHVEMT 210
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 45.2 bits (102), Expect = 6e-05
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Frame = +2
Query: 209 YGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAXVEFEDPRDAED 373
Y +Y+GDL + S+ L + FS GP+ ++ V R+ G+A V F+ P DAE
Sbjct: 54 YSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAER 113
Query: 374 AVRGLDGRTICGRRARVEMS 433
A+ ++ I GR R+ S
Sbjct: 114 ALDTMNFEVIHGRPMRIMWS 133
Score = 32.7 bits (71), Expect = 0.35
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +2
Query: 200 MSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRN--VWVARN--PPGFAXVEFEDPRDA 367
+ RY +YV ++ + + L D FS +G + + V V N GF V FE P +A
Sbjct: 337 VQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEA 396
Query: 368 EDAVRGLDGRTI 403
AV ++ + I
Sbjct: 397 TAAVTDMNSKMI 408
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 45.2 bits (102), Expect = 6e-05
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Frame = +2
Query: 209 YGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAXVEFEDPRDAED 373
Y +Y+GDL + S+ L + FS GP+ ++ V R+ G+A V F+ P DAE
Sbjct: 54 YSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAER 113
Query: 374 AVRGLDGRTICGRRARVEMS 433
A+ ++ I GR R+ S
Sbjct: 114 ALDTMNFEVIHGRPMRIMWS 133
Score = 32.7 bits (71), Expect = 0.35
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +2
Query: 200 MSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRN--VWVARN--PPGFAXVEFEDPRDA 367
+ RY +YV ++ + + L D FS +G + + V V N GF V FE P +A
Sbjct: 337 VQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEA 396
Query: 368 EDAVRGLDGRTI 403
AV ++ + I
Sbjct: 397 TAAVTDMNSKMI 408
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 44.0 bits (99), Expect = 1e-04
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Frame = +2
Query: 212 GDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAXVEFEDPRDAEDA 376
G VYVG+ ++ EL + FS G + NV + + P GFA +EF + A+ A
Sbjct: 3 GIFSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRA 62
Query: 377 VRGLDGRTICGRRARVEMSN 436
V ++G GR RV ++N
Sbjct: 63 VEQMNGAEFNGRPLRVNLAN 82
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 43.2 bits (97), Expect = 3e-04
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Frame = +2
Query: 224 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAXVEFEDPRDAEDAVRGL 388
VYVG++ ++ E+ + F+ G + NV + + P GFA VEF + A+ AV L
Sbjct: 8 VYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQL 67
Query: 389 DGRTICGRRARVEMSN 436
+G GR RV +N
Sbjct: 68 NGVAFNGRNLRVNYAN 83
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 43.2 bits (97), Expect = 3e-04
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Frame = +2
Query: 191 SSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAXVEFED 355
+ T S Y +YVGDL + ++ L + FS GP+ ++ V R+ G+A V F+
Sbjct: 23 NQTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQ 82
Query: 356 PRDAEDAVRGLDGRTICGRRARVEMS 433
P DAE A+ ++ + G+ R+ S
Sbjct: 83 PADAERAMDTMNFEALHGKPMRIMWS 108
Score = 36.3 bits (80), Expect = 0.029
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Frame = +2
Query: 182 QKASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP----PGFAXVEF 349
Q + M +Y +YV +L L+ F YG + + V + GF V F
Sbjct: 305 QHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCF 364
Query: 350 EDPRDAEDAVRGLDGRTICGR 412
E P +A AV ++ + +C +
Sbjct: 365 EKPEEATSAVTEMNSKMVCSK 385
Score = 34.3 bits (75), Expect = 0.12
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = +2
Query: 200 MSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFA----XVEFEDPRDA 367
M R G +++ +L + D FS +G + + VA + GF+ V FE A
Sbjct: 114 MRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAA 173
Query: 368 EDAVRGLDGRTICGRRARV 424
++A++ ++G + G++ V
Sbjct: 174 QNAIQKVNGMLLAGKKVFV 192
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 43.2 bits (97), Expect = 3e-04
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Frame = +2
Query: 191 SSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAXVEFED 355
+ T S Y +YVGDL + ++ L + FS GP+ ++ V R+ G+A V F+
Sbjct: 23 NQTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQ 82
Query: 356 PRDAEDAVRGLDGRTICGRRARVEMS 433
P DAE A+ ++ + G+ R+ S
Sbjct: 83 PADAERAMDTMNFEALHGKPMRIMWS 108
Score = 36.3 bits (80), Expect = 0.029
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Frame = +2
Query: 182 QKASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP----PGFAXVEF 349
Q + M +Y +YV +L L+ F YG + + V + GF V F
Sbjct: 245 QHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCF 304
Query: 350 EDPRDAEDAVRGLDGRTICGR 412
E P +A AV ++ + +C +
Sbjct: 305 EKPEEATSAVTEMNSKMVCSK 325
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 43.2 bits (97), Expect = 3e-04
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Frame = +2
Query: 191 SSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAXVEFED 355
+ T S Y +YVGDL + ++ L + FS GP+ ++ V R+ G+A V F+
Sbjct: 23 NQTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQ 82
Query: 356 PRDAEDAVRGLDGRTICGRRARVEMS 433
P DAE A+ ++ + G+ R+ S
Sbjct: 83 PADAERAMDTMNFEALHGKPMRIMWS 108
Score = 36.3 bits (80), Expect = 0.029
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Frame = +2
Query: 182 QKASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP----PGFAXVEF 349
Q + M +Y +YV +L L+ F YG + + V + GF V F
Sbjct: 305 QHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCF 364
Query: 350 EDPRDAEDAVRGLDGRTICGR 412
E P +A AV ++ + +C +
Sbjct: 365 EKPEEATSAVTEMNSKMVCSK 385
Score = 34.3 bits (75), Expect = 0.12
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = +2
Query: 200 MSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFA----XVEFEDPRDA 367
M R G +++ +L + D FS +G + + VA + GF+ V FE A
Sbjct: 114 MRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAA 173
Query: 368 EDAVRGLDGRTICGRRARV 424
++A++ ++G + G++ V
Sbjct: 174 QNAIQKVNGMLLAGKKVFV 192
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 41.9 bits (94), Expect = 6e-04
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Frame = +2
Query: 185 KASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVA---RNPPGFAXVEFED 355
+++S+ S G +++V ++ +P+L F GP+ +V + R GF V ++
Sbjct: 89 RSTSSSSTDGPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQN 148
Query: 356 PRDAEDAVRGLDGRTICGRRARVEMS 433
P DA+ A +G TI GRR V ++
Sbjct: 149 PDDADRARAEFNGTTIEGRRVEVNLA 174
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 41.9 bits (94), Expect = 6e-04
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Frame = +2
Query: 185 KASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVA---RNPPGFAXVEFED 355
+++S+ S G +++V ++ +P+L F GP+ +V + R GF V ++
Sbjct: 89 RSTSSSSTDGPRRLHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNERGSKGFGFVTMQN 148
Query: 356 PRDAEDAVRGLDGRTICGRRARVEMS 433
P DA+ A +G TI GRR V ++
Sbjct: 149 PDDADRARAEFNGTTIEGRRVEVNLA 174
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 41.1 bits (92), Expect = 0.001
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Frame = +2
Query: 185 KASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAXVEF 349
K+S + V+VG++ + S+ + FS G + ++ + + P G+ +EF
Sbjct: 7 KSSGVGNDRSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEF 66
Query: 350 EDPRDAEDAVRGLDGRTICGRRARVE 427
D + AE A+R L+G + GR RV+
Sbjct: 67 PDIQTAEVAIRNLNGYELSGRILRVD 92
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/75 (26%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Frame = +2
Query: 221 KVYVGDLGNNASKPELEDAFSYYGPLR----NVWVARNPPGFAXVEFEDPRDAEDAVRGL 388
K+++G L N ++ ++++ +GPL+ NV N G+A E+ DP + A+ GL
Sbjct: 292 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 351
Query: 389 DGRTICGRRARVEMS 433
+G + ++ V+++
Sbjct: 352 NGMQLGDKQLVVQLA 366
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/75 (26%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Frame = +2
Query: 221 KVYVGDLGNNASKPELEDAFSYYGPLR----NVWVARNPPGFAXVEFEDPRDAEDAVRGL 388
K+++G L N ++ ++++ +GPL+ NV N G+A E+ DP + A+ GL
Sbjct: 292 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 351
Query: 389 DGRTICGRRARVEMS 433
+G + ++ V+++
Sbjct: 352 NGMQLGDKQLVVQLA 366
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/75 (26%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Frame = +2
Query: 221 KVYVGDLGNNASKPELEDAFSYYGPLR----NVWVARNPPGFAXVEFEDPRDAEDAVRGL 388
K+++G L N ++ ++++ +GPL+ NV N G+A E+ DP + A+ GL
Sbjct: 267 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 326
Query: 389 DGRTICGRRARVEMS 433
+G + ++ V+++
Sbjct: 327 NGMQLGDKQLVVQLA 341
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/75 (26%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Frame = +2
Query: 221 KVYVGDLGNNASKPELEDAFSYYGPLR----NVWVARNPPGFAXVEFEDPRDAEDAVRGL 388
K+++G L N ++ ++++ +GPL+ NV N G+A E+ DP + A+ GL
Sbjct: 270 KIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAGL 329
Query: 389 DGRTICGRRARVEMS 433
+G + ++ V+++
Sbjct: 330 NGMQLGDKQLVVQLA 344
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 40.7 bits (91), Expect = 0.001
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Frame = +2
Query: 215 DCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVAR-----NPPGFAXVEFEDPRDAEDAV 379
D +V+ GDLGN S L AF Y + V R G+ V F D D A+
Sbjct: 202 DFRVFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKSKGYGFVSFRDSEDYVRAM 261
Query: 380 RGLDGRTICGRRARVEMS 433
R +DG+ + R ++ S
Sbjct: 262 REMDGKYVGNRPIKLRKS 279
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/83 (25%), Positives = 43/83 (51%)
Frame = +2
Query: 173 LTIQKASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAXVEFE 352
LT ++ ++ ++ + VYVG++ + +L D FS YG + V + + +A V +E
Sbjct: 223 LTFEQVFNS-TKADNTSVYVGNISQQTTDADLRDLFSTYGDIAEVRIFKT-QRYAFVRYE 280
Query: 353 DPRDAEDAVRGLDGRTICGRRAR 421
A A+ ++G+ + G + R
Sbjct: 281 KKECATKAIMEMNGKEMAGNQVR 303
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 38.7 bits (86), Expect = 0.005
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Frame = +2
Query: 230 VGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAXVEFEDPRDAEDAVRGLDG 394
+ +L + +L F YG + +V + +R GF V F + RDAE A+ DG
Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDG 82
Query: 395 RTICGRRARVEMS 433
+ + GR RV ++
Sbjct: 83 KLVDGRELRVTLA 95
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 38.7 bits (86), Expect = 0.005
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Frame = +2
Query: 230 VGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAXVEFEDPRDAEDAVRGLDG 394
+ +L + +L F YG + +V + +R GF V F + RDAE A+ DG
Sbjct: 23 IDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDG 82
Query: 395 RTICGRRARVEMS 433
+ + GR RV ++
Sbjct: 83 KLVDGRELRVTLA 95
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 37.1 bits (82), Expect = 0.016
Identities = 18/73 (24%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Frame = +2
Query: 224 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAXVEFEDPRDAEDAVRGL 388
V+V ++ A++ ++ D FS YG ++N+ + + G+A VE+E ++A +A+
Sbjct: 57 VFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLKGYALVEYETQKEANEAIDQS 116
Query: 389 DGRTICGRRARVE 427
+ + G+ +V+
Sbjct: 117 NDTDLLGQNVKVD 129
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 37.1 bits (82), Expect = 0.016
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Frame = +2
Query: 221 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAXVEFEDPRDAEDAVRG 385
++YVG + + L AF +GP++++ ++ +P FA VE+E P A A
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQES 162
Query: 386 LDGRTICGRRARV 424
++G+ + GR +V
Sbjct: 163 MNGQMLGGRNLKV 175
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +2
Query: 221 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAXVEFEDPRDAEDAVRG 385
+VYV + + S+ +L+ F +G + +AR P GF +EF + +A+ G
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAG 267
Query: 386 LDGRTICGRRAR 421
++ + G+ R
Sbjct: 268 MNMFDLGGQYLR 279
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 37.1 bits (82), Expect = 0.016
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Frame = +2
Query: 221 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAXVEFEDPRDAEDAVRG 385
++YVG + + L AF +GP++++ ++ +P FA VE+E P A A
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQES 162
Query: 386 LDGRTICGRRARV 424
++G+ + GR +V
Sbjct: 163 MNGQMLGGRNLKV 175
Score = 31.9 bits (69), Expect = 0.62
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Frame = +2
Query: 221 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAXVEFEDPRDAEDAVRG 385
+VYV + + S+ +L+ F +G + +AR P GF +EF + +A+ G
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAG 267
Query: 386 LDGRTICGRRARV 424
++ + G+ RV
Sbjct: 268 MNMFDLGGQYLRV 280
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 37.1 bits (82), Expect = 0.016
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Frame = +2
Query: 221 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAXVEFEDPRDAEDAVRG 385
++YVG + + L AF +GP++++ ++ +P FA VE+E P A A
Sbjct: 103 RIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQES 162
Query: 386 LDGRTICGRRARV 424
++G+ + GR +V
Sbjct: 163 MNGQMLGGRNLKV 175
Score = 31.9 bits (69), Expect = 0.62
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Frame = +2
Query: 221 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAXVEFEDPRDAEDAVRG 385
+VYV + + S+ +L+ F +G + +AR P GF +EF + +A+ G
Sbjct: 208 RVYVSSVHPDLSETDLKSVFEAFGEIVKCQLARAPTGRGHRGFGYLEFNNLTSQSEAIAG 267
Query: 386 LDGRTICGRRARV 424
++ + G+ RV
Sbjct: 268 MNMFDLGGQYLRV 280
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 36.7 bits (81), Expect = 0.022
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Frame = +2
Query: 224 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAXVEFEDPRDAEDAVRGL 388
VYVG+ ++ +L + FS G + NV + + P GFA VEF + A+ AV
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65
Query: 389 DGRTICGRRARVEMS 433
+G GR RV ++
Sbjct: 66 NGVDFNGRALRVNLA 80
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 36.7 bits (81), Expect = 0.022
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = +2
Query: 212 GDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVA---RNPPGFAXVEFEDPRDAEDAVR 382
G +++V ++ P+L+ F +G + +V + R GF V E P+DAE A +
Sbjct: 151 GPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQ 210
Query: 383 GLDGRTICGRRARV 424
L G I GR+ V
Sbjct: 211 ELHGSMIEGRKIEV 224
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 36.7 bits (81), Expect = 0.022
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = +2
Query: 212 GDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVA---RNPPGFAXVEFEDPRDAEDAVR 382
G +++V ++ P+L+ F +G + +V + R GF V E P+DAE A +
Sbjct: 151 GPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQ 210
Query: 383 GLDGRTICGRRARV 424
L G I GR+ V
Sbjct: 211 ELHGSMIEGRKIEV 224
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 36.3 bits (80), Expect = 0.029
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +2
Query: 224 VYVGDLGNNASKPELEDAFSYYGPLRNVWV----ARNPPGFAXVEFEDPRDAEDAVRGLD 391
++VG + S+ +L F YG ++ + + A P G+A +E+ D + A + D
Sbjct: 106 LFVGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIEYSDKAEMHTAYKKAD 165
Query: 392 GRTICGRRARVE 427
G + G+R V+
Sbjct: 166 GIKVDGKRLVVD 177
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 36.3 bits (80), Expect = 0.029
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Frame = +2
Query: 182 QKASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP----PGFAXVEF 349
Q + M +Y +YV +L L+ F YG + + V + GF V F
Sbjct: 242 QHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCF 301
Query: 350 EDPRDAEDAVRGLDGRTICGR 412
E P +A AV ++ + +C +
Sbjct: 302 EKPEEATSAVTEMNSKMVCSK 322
Score = 34.3 bits (75), Expect = 0.12
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = +2
Query: 200 MSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFA----XVEFEDPRDA 367
M R G +++ +L + D FS +G + + VA + GF+ V FE A
Sbjct: 51 MRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAA 110
Query: 368 EDAVRGLDGRTICGRRARV 424
++A++ ++G + G++ V
Sbjct: 111 QNAIQKVNGMLLAGKKVFV 129
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 35.5 bits (78), Expect = 0.050
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Frame = +2
Query: 221 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAXVEFEDPRDAEDAVRG 385
K+++G L ++ + +L + FS +GP+ + V R+P GF V F AE A+
Sbjct: 50 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMND 109
Query: 386 ----LDGRTICGRRA--RVEMSN 436
L G+T+ +RA R +MS+
Sbjct: 110 RPHKLGGKTVDSKRAIPREQMSS 132
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 35.5 bits (78), Expect = 0.050
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Frame = +2
Query: 221 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAXVEFEDPRDAEDAVRG 385
K+++G L ++ + +L + FS +GP+ + V R+P GF V F AE A+
Sbjct: 70 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMND 129
Query: 386 ----LDGRTICGRRA--RVEMSN 436
L G+T+ +RA R +MS+
Sbjct: 130 RPHKLGGKTVDSKRAIPREQMSS 152
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 35.5 bits (78), Expect = 0.050
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 11/83 (13%)
Frame = +2
Query: 221 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNP-----PGFAXVEFEDPRDAEDAVRG 385
K+++G L ++ + +L + FS +GP+ + V R+P GF V F AE A+
Sbjct: 71 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRDPNTKHSRGFGFVTFASIFSAESAMND 130
Query: 386 ----LDGRTICGRRA--RVEMSN 436
L G+T+ +RA R +MS+
Sbjct: 131 RPHKLGGKTVDSKRAIPREQMSS 153
>AC024793-5|AAF60689.1| 79|Caenorhabditis elegans Hypothetical
protein Y48G1BL.4 protein.
Length = 79
Score = 35.5 bits (78), Expect = 0.050
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 221 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAXVEFEDPRDAEDAV 379
+VY+G N AS + E F YG L + + +N G +F+D DA+D +
Sbjct: 3 RVYIGRFPNRASDRDAEHFFCDYGKLPDA-IMKNVFGVGCKDFQDQSDADDII 54
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 35.5 bits (78), Expect = 0.050
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +2
Query: 509 CYDCGDRGHYARDC 550
CY+CG RGHY+RDC
Sbjct: 69 CYNCGGRGHYSRDC 82
Score = 29.5 bits (63), Expect = 3.3
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +2
Query: 509 CYDCGDRGHYARDC 550
CY+C + GH++RDC
Sbjct: 37 CYNCQETGHFSRDC 50
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 34.7 bits (76), Expect = 0.088
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Frame = +2
Query: 221 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAXVEFEDPRDAEDAVRG 385
K++VG L +N + + + +S +G + ++ V R+P GF V F + + A++
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83
Query: 386 ----LDGRTICGRRA 418
+DG+T+ +RA
Sbjct: 84 RPHIIDGKTVDPKRA 98
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 34.7 bits (76), Expect = 0.088
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Frame = +2
Query: 221 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAXVEFEDPRDAEDAVRG 385
K++VG L +N + + + +S +G + ++ V R+P GF V F + + A++
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83
Query: 386 ----LDGRTICGRRA 418
+DG+T+ +RA
Sbjct: 84 RPHIIDGKTVDPKRA 98
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 34.7 bits (76), Expect = 0.088
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Frame = +2
Query: 221 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAXVEFEDPRDAEDAVRG 385
K++VG L +N + + + +S +G + ++ V R+P GF V F + + A++
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83
Query: 386 ----LDGRTICGRRA 418
+DG+T+ +RA
Sbjct: 84 RPHIIDGKTVDPKRA 98
>AC024844-6|AAK29956.1| 442|Caenorhabditis elegans Hypothetical
protein Y65B4A.1 protein.
Length = 442
Score = 34.7 bits (76), Expect = 0.088
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +2
Query: 257 KPELEDAFSYYGPLRNVWV-ARNPPGFAXVEFEDPRDAEDAVRGLDGRTICGRRARVEM 430
K E+ + YG ++ V V A +P G V F +++ AV+ L GR + GR+ E+
Sbjct: 335 KEEMTQSCQKYGIVKKVVVYANHPDGVVSVTFPTTEESDMAVKYLHGRVVDGRKLTAEL 393
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 34.3 bits (75), Expect = 0.12
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Frame = +2
Query: 188 ASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNV-----WVARNPPGFAXVEFE 352
A + R D +YVG L S+ L + GP+ +V V N GF VEF
Sbjct: 3 AGPIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFM 62
Query: 353 DPRDAEDAVRGLDGRTICGRRARVEMSN 436
DA+ A++ L+ + G+ +V ++
Sbjct: 63 GEEDADYAIKILNMIKLYGKPIKVNKAS 90
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Frame = +2
Query: 224 VYVGDLGNNASKPELEDAFSYYGPLRNV-WVARN-----PPGFAXVEFEDPRDAEDAVRG 385
++VG+L + L D FS +G + V + R+ GFA + F ++ A+
Sbjct: 102 IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEA 161
Query: 386 LDGRTICGRRARV 424
++G+ +C R V
Sbjct: 162 MNGQFLCNRAITV 174
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 34.3 bits (75), Expect = 0.12
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Frame = +2
Query: 224 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAXVEFEDPRDAEDAVRGL 388
V+VGDL + +L +AF +G + + V R+ G+ V + +AE A+ +
Sbjct: 24 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 83
Query: 389 DGRTICGRR 415
+G+ + GRR
Sbjct: 84 NGQWL-GRR 91
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 34.3 bits (75), Expect = 0.12
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Frame = +2
Query: 224 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAXVEFEDPRDAEDAVRGL 388
V+VGDL + +L +AF +G + + V R+ G+ V + +AE A+ +
Sbjct: 34 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 93
Query: 389 DGRTICGRR 415
+G+ + GRR
Sbjct: 94 NGQWL-GRR 101
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 34.3 bits (75), Expect = 0.12
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Frame = +2
Query: 224 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAXVEFEDPRDAEDAVRGL 388
V+VGDL + +L +AF +G + + V R+ G+ V + +AE A+ +
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 389 DGRTICGRR 415
+G+ + GRR
Sbjct: 197 NGQWL-GRR 204
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 34.3 bits (75), Expect = 0.12
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Frame = +2
Query: 224 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAXVEFEDPRDAEDAVRGL 388
V+VGDL + +L +AF +G + + V R+ G+ V + +AE A+ +
Sbjct: 105 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 164
Query: 389 DGRTICGRR 415
+G+ + GRR
Sbjct: 165 NGQWL-GRR 172
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 34.3 bits (75), Expect = 0.12
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Frame = +2
Query: 188 ASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNV-----WVARNPPGFAXVEFE 352
A + R D +YVG L S+ L + GP+ +V V N GF VEF
Sbjct: 13 AGPIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFM 72
Query: 353 DPRDAEDAVRGLDGRTICGRRARVEMSN 436
DA+ A++ L+ + G+ +V ++
Sbjct: 73 GEEDADYAIKILNMIKLYGKPIKVNKAS 100
Score = 29.9 bits (64), Expect = 2.5
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Frame = +2
Query: 224 VYVGDLGNNASKPELEDAFSYYGPLRNV-WVARN-----PPGFAXVEFEDPRDAEDAVRG 385
++VG+L + L D FS +G + V + R+ GFA + F ++ A+
Sbjct: 112 IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEA 171
Query: 386 LDGRTICGRRARV 424
++G+ +C R V
Sbjct: 172 MNGQFLCNRAITV 184
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 33.5 bits (73), Expect = 0.20
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +2
Query: 224 VYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAXVEFEDPRDAEDAVRGL 388
VYVG++ A+ E+E F G + V + + +P GFA VEF + ++A+
Sbjct: 80 VYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNALAMT 139
Query: 389 DGRTICGRRARVE 427
D + GR+ +V+
Sbjct: 140 DS-LLRGRQIKVD 151
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 32.7 bits (71), Expect = 0.35
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +2
Query: 218 CKVYVGDLGNNASKPELEDAFSYYGPLRNVWVA-----RNPPGFAXVEFEDPRDAEDAVR 382
C +YVG+L + ++ + F G +R V + + P GF VE+ DAE A++
Sbjct: 37 CTLYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEYYTREDAELALQ 96
Query: 383 GLDGRTICGRRARVE 427
+ + R R +
Sbjct: 97 NISNTRMDDRVIRAD 111
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 32.3 bits (70), Expect = 0.47
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 278 FSYYGPLRNVWVA---RNPPGFAXVEFEDPRDAEDAVRGLDGRTICGRRARVEMS 433
F GP+ +V + R GF V ++P DA+ A +G TI GRR V ++
Sbjct: 2 FEKVGPVVDVEIIFNERGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 56
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 32.3 bits (70), Expect = 0.47
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +2
Query: 224 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAXVEFEDPRDAEDAVRGL 388
+Y+G L S+ ++ FS YG + N+ + R+ GFA + ++D R AV
Sbjct: 40 IYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNF 99
Query: 389 DGRTICGRRARVE 427
+G ++ R RV+
Sbjct: 100 NGISLHKRMIRVD 112
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 31.5 bits (68), Expect = 0.82
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +2
Query: 212 GDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFA 337
G C+++VG+L N + EL++ FS +G + +++ GFA
Sbjct: 114 GRCRLFVGNLPNEVKETELKELFSPHGDIAECYLSGK--GFA 153
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 31.1 bits (67), Expect = 1.1
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Frame = +2
Query: 185 KASSTMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRNVWVARN----PPGFAXVEFE 352
K S+T+ + KV+V ++ A+ EL+ FS +G + +V + P G A V+F+
Sbjct: 675 KFSTTLEK---SKVFVRNVHFQATDDELKALFSKFGTVTSVRRVTHKDGKPKGIAFVDFD 731
Query: 353 DPRDAEDAVRGLDGRTICGRRARVEMSN 436
A+ V D + R V +SN
Sbjct: 732 TEASAQKCVASGDKLMLRERELEVALSN 759
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 30.7 bits (66), Expect = 1.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 509 CYDCGDRGHYARDC 550
CY CG++GHYA C
Sbjct: 252 CYKCGEKGHYANRC 265
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 9/70 (12%)
Frame = +2
Query: 221 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAXVEFEDPRDAEDAVRG 385
K+++G L + L D F +G + V R+P GF + F DP + +
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNN 105
Query: 386 ----LDGRTI 403
LDG+ I
Sbjct: 106 REHELDGKKI 115
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = +2
Query: 224 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARN-----PPGFAXVEFEDPRDAEDAVRGL 388
V+VGDL + +L +AF +G + + R+ G+ V + DAE A+ +
Sbjct: 134 VFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEM 193
Query: 389 DGRTICGRR 415
+G + GRR
Sbjct: 194 NGAWL-GRR 201
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 9/70 (12%)
Frame = +2
Query: 221 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAXVEFEDPRDAEDAVRG 385
K+++G L + L D F +G + V R+P GF + F DP + +
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNN 105
Query: 386 ----LDGRTI 403
LDG+ I
Sbjct: 106 REHELDGKKI 115
>Z69664-10|CAC42313.1| 1311|Caenorhabditis elegans Hypothetical
protein T14G10.2b protein.
Length = 1311
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 173 LTIQKASS--TMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRN 304
+TI K+S +M + K+ DL + S P++ YYGP+R+
Sbjct: 734 MTILKSSKEDSMDFTDEAKISSADLRPSRSNPDITSISQYYGPVRS 779
>Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical
protein T14G10.2a protein.
Length = 1470
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 173 LTIQKASS--TMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRN 304
+TI K+S +M + K+ DL + S P++ YYGP+R+
Sbjct: 734 MTILKSSKEDSMDFTDEAKISSADLRPSRSNPDITSISQYYGPVRS 779
>Z68880-11|CAC42342.1| 1311|Caenorhabditis elegans Hypothetical
protein T14G10.2b protein.
Length = 1311
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 173 LTIQKASS--TMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRN 304
+TI K+S +M + K+ DL + S P++ YYGP+R+
Sbjct: 734 MTILKSSKEDSMDFTDEAKISSADLRPSRSNPDITSISQYYGPVRS 779
>Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical
protein T14G10.2a protein.
Length = 1470
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 173 LTIQKASS--TMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRN 304
+TI K+S +M + K+ DL + S P++ YYGP+R+
Sbjct: 734 MTILKSSKEDSMDFTDEAKISSADLRPSRSNPDITSISQYYGPVRS 779
>AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C
protein.
Length = 1347
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 173 LTIQKASS--TMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRN 304
+TI K+S +M + K+ DL + S P++ YYGP+R+
Sbjct: 611 MTILKSSKEDSMDFTDEAKISSADLRPSRSNPDITSISQYYGPVRS 656
>AF308448-1|AAL09434.1| 1311|Caenorhabditis elegans PXF isoform B
protein.
Length = 1311
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 173 LTIQKASS--TMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRN 304
+TI K+S +M + K+ DL + S P++ YYGP+R+
Sbjct: 734 MTILKSSKEDSMDFTDEAKISSADLRPSRSNPDITSISQYYGPVRS 779
>AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A
protein.
Length = 1470
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 173 LTIQKASS--TMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRN 304
+TI K+S +M + K+ DL + S P++ YYGP+R+
Sbjct: 734 MTILKSSKEDSMDFTDEAKISSADLRPSRSNPDITSISQYYGPVRS 779
>AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.
Length = 1470
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 173 LTIQKASS--TMSRYGDCKVYVGDLGNNASKPELEDAFSYYGPLRN 304
+TI K+S +M + K+ DL + S P++ YYGP+R+
Sbjct: 734 MTILKSSKEDSMDFTDEAKISSADLRPSRSNPDITSISQYYGPVRS 779
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 29.1 bits (62), Expect = 4.4
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +2
Query: 221 KVYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPP-----GFAXVEFEDPRDAEDAVRG 385
++++ +L + +L+ F YG + V V + GFA VEF P A A
Sbjct: 280 RLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSA 339
Query: 386 LDGRTICGRRARV 424
LDG GR +
Sbjct: 340 LDGYVFKGRMMHI 352
>Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical protein
Y6B3B.1 protein.
Length = 1829
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 548 SHERSVLCRRSRNNDHHTAEEADANEVVDPGCHNRDPH*TFL 423
SHE + CRR DHH ++++ + ++D + R P FL
Sbjct: 1638 SHEAAQACRRCSEADHHPSDDSIIDLMIDTS-NPRSPPMPFL 1678
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +2
Query: 224 VYVGDLGNNASKPELEDAFSYYGPLRNVWVARNPPGFAXVEFE 352
++ +L ++A+ LE F+ + L+++ + N PG A VEF+
Sbjct: 134 LFCTNLPDSATAEMLEIMFNQFAGLKDIRMVPNRPGIAFVEFD 176
>AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical
protein Y6B3B.1 protein.
Length = 1829
Score = 29.1 bits (62), Expect = 4.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 548 SHERSVLCRRSRNNDHHTAEEADANEVVDPGCHNRDPH*TFL 423
SHE + CRR DHH ++++ + ++D + R P FL
Sbjct: 1638 SHEAAQACRRCSEADHHPSDDSIIDLMIDTS-NPRSPPMPFL 1678
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Frame = +2
Query: 224 VYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAXVEFEDPRDAEDAVRGL 388
+Y+ L N + L + S YG + + N G+ V+FE P+ A AV GL
Sbjct: 109 LYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGL 168
Query: 389 DGRTICGRRARVE 427
+ + + A+++
Sbjct: 169 NTEGVQAQMAKLQ 181
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 28.7 bits (61), Expect = 5.8
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Frame = +2
Query: 224 VYVGDLGNNASKPELEDAFSYYGPLRNVWV-----ARNPPGFAXVEFEDPRDAEDAVRGL 388
+Y+ L N + L + S YG + + N G+ V+FE P+ A AV GL
Sbjct: 83 LYIRGLMPNTNDDLLREMCSKYGNIASTKAIMDKATNNCKGYGFVDFESPQAAAAAVDGL 142
Query: 389 DGRTICGRRARVE 427
+ + + A+++
Sbjct: 143 NTEGVQAQMAKLQ 155
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 28.7 bits (61), Expect = 5.8
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 509 CYDCGDRGHYARDC 550
C +CG GH+A+DC
Sbjct: 641 CRNCGQEGHFAKDC 654
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 28.7 bits (61), Expect = 5.8
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 509 CYDCGDRGHYARDC 550
C +CG GH+A+DC
Sbjct: 641 CRNCGQEGHFAKDC 654
>AF016665-4|AAC71180.1| 347|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 75 protein.
Length = 347
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 593 YACGTSNDCVADDVNSHERSVLCRRSRNNDHHTAEEADANE 471
YAC +N+C S+ER +LCR R + A + NE
Sbjct: 76 YACSRNNNCAT----SYERKILCRACRYTNCLEAGMSRGNE 112
>AF016654-7|AAB66029.2| 324|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 72 protein.
Length = 324
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 593 YACGTSNDCVADDVNSHERSVLCRRSRNNDHHTAEEADANE 471
YAC +N+C S+ER +LCR R + A + NE
Sbjct: 41 YACSRNNNCAT----SYERKILCRACRYTNCLKAGMSRGNE 77
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,716,211
Number of Sequences: 27780
Number of extensions: 286108
Number of successful extensions: 860
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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