Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_E18
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    76   8e-15
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po...    60   4e-10
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    32   0.13 
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    28   1.6  
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    27   3.6  
SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces pomb...    27   4.7  
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    26   6.3  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    26   6.3  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    26   8.3  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 75.8 bits (178), Expect = 8e-15
 Identities = 53/190 (27%), Positives = 93/190 (48%), Gaps = 4/190 (2%)
 Frame = +2

Query: 185 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN----ESLRGGDLATQARVWQW 352
           N   D   KFP  K+P F   DG   L+E+ AIA+Y+A+     +L G     +A+V Q+
Sbjct: 38  NFPADLAAKFPLQKMPVFVGKDG-FPLSETLAIAFYLASLNKTRALNGTTAEEKAKVLQY 96

Query: 353 ASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERIT 532
            S+++SEL  A    + P +    +++Q  + A++ +       D  L ++T+LV  R+T
Sbjct: 97  CSFTNSELPGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTYLVGSRLT 156

Query: 533 LADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHXPQVSAVVGSLTLCAAPPTYDP 712
           LAD+     L     +VL  S  +   ++ R++ T+ H  ++ A+   L     P     
Sbjct: 157 LADIFFTCFLKFGATYVLTKSYLAKYTHIYRYYQTIYHQAKLDAITEPLKFIDQPLPIIK 216

Query: 713 KKYQELAGAQ 742
            + +E A A+
Sbjct: 217 AENKEAAPAK 226


>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 220

 Score = 60.1 bits (139), Expect = 4e-10
 Identities = 41/160 (25%), Positives = 78/160 (48%), Gaps = 8/160 (5%)
 Frame = +2

Query: 191 SEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN------ESLRGGDLATQARVWQW 352
           S D   KFP  K+P F  ADG  L      + Y+         E L   +   +A + +W
Sbjct: 40  SADLAAKFPLQKLPVFIGADGFELSEVIAIVKYFYEKGKHNDKEGLGPVNEVEEAEMLKW 99

Query: 353 ASWSDSELL-PASCA-WVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTER 526
             + + +++ P +   WV  + G + + ++  + + +  + +LK+ +  +  RT+LV +R
Sbjct: 100 MCFINFDIVTPQNVRPWVGMFRGNIPYEEKPFKESATRAIDSLKIPNELVKDRTYLVGDR 159

Query: 527 ITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAH 646
            TLAD+   S L   F  ++D   R  L ++ R+++T+ H
Sbjct: 160 FTLADLFFGSLLRIFFNSIIDEKTRKELPHLTRYYITMFH 199


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +2

Query: 482 LDGHLLTRTFLVTER-ITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHXPQV 658
           LD  L + TF+  +  I++AD+ V++ + H++   L       L NV RWF  + H   V
Sbjct: 128 LDEFLKSSTFIAQDSGISVADLAVYARI-HSYICGLSAKEGYKLNNVCRWFDFIQHQESV 186

Query: 659 SAVVGSLTLCAAPPTYDPKKYQ 724
                S+++  A    +  K Q
Sbjct: 187 MEAANSMSMKLANIDLNAPKIQ 208


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 459 TYWPP*KYWTDIFSHAPSLLPRESHLPMSLS 551
           TY PP  Y  D+FS APS+   +     S+S
Sbjct: 257 TYLPPFNYDHDVFSFAPSVASADQFTESSMS 287


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 321 IWLPKPVSGSGHHGLTANYCL-LPALGSSLTLV 416
           +W+P PV  SG    T   C+ LP  G  +T V
Sbjct: 23  LWVPTPVGRSGRKHRTLKMCIVLPDTGYDVTQV 55


>SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 133 IVRRSTLYKRGSFPDKCKVPRPPWLEFSGKIL 38
           ++  ST+YK G   +K   P P  L F+ K+L
Sbjct: 20  VISPSTIYKIGRHTNKSTSPSPSNLFFNSKVL 51


>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 261 STFPSALSNAGTFPAGNFFKKSSDL 187
           +TFP A +  GTFP G  F   S L
Sbjct: 52  ATFPWAQAPVGTFPIGQLFDPVSGL 76


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 272 SNAIAYYVANESLRGGDLATQARVWQWAS 358
           S + A Y+ NE+LR G +   +R+W  AS
Sbjct: 780 STSSAVYIKNENLRKGFVLGISRIWVSAS 808


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +3

Query: 351 GHHGLTANYCLLPALGSSLTLV--SCNSTN-RMLNVQSL 458
           GH  L  + C  P++GSS  L+  +C   N R+  V++L
Sbjct: 213 GHTDLIRDICWAPSMGSSYYLIATACKDGNVRIFKVETL 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,431,244
Number of Sequences: 5004
Number of extensions: 71455
Number of successful extensions: 217
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)