Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_E08
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB21E7.07 |aes1|SPAPB21E7.07, SPAPB21E7.07|enhancer of RNA-me...    28   2.0  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   2.0  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    27   4.6  
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    26   6.1  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    26   6.1  

>SPBPB21E7.07 |aes1|SPAPB21E7.07, SPAPB21E7.07|enhancer of
           RNA-mediated gene silencing |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/45 (40%), Positives = 27/45 (60%)
 Frame = +2

Query: 359 LEHLNRDPAFLAGAGAGPWPYLGVNCEGIVNLSVRNGTVDQGTRI 493
           L H+N DPA  +GAGA    Y+G + +   +LS    T+ QGT++
Sbjct: 220 LIHVNEDPACGSGAGA-VGVYIGSSQKTPTSLSF---TISQGTKL 260


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 27/120 (22%), Positives = 46/120 (38%)
 Frame = -3

Query: 504 CTDTILVPWSTVPLRTLRFTIPSQFTPRYGHGPAPAPARKAGSRFKCSSSLARSYILSRL 325
           CT +  VP+++ P+ +  +TI S  TP     P         +    +S+   S  L+  
Sbjct: 496 CTTSTSVPYTSTPVTSSNYTISSS-TP-VTSTPVTTTNCTTSTSVLYTSTPVTSTPLATT 553

Query: 324 TCGTKYGGPPISTSLASPVNPGDXXXXXXXXXXXXSATDTSTNLKFVVKPFDNTQATSSN 145
            C T    P  ST + S                  +   TST++ +   P  +  +TSS+
Sbjct: 554 NCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPITSPNSTSSS 613


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 630 VVAKNRTGKSNFITSIRETLKTHY 701
           +V +N +GKSNF  +IR  L   Y
Sbjct: 30  IVGRNGSGKSNFFAAIRFVLSDAY 53


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 414 HGPAPAPARKAGSRFKCSSSLARSYILSRLTCGTKYGG 301
           HGP  + A       +    L  S +   LT GT++GG
Sbjct: 420 HGPCVSGAMNTIITTRAGKDLISSLVAGLLTIGTRFGG 457


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
 Frame = -3

Query: 507 GCTDTILVPWSTVPLRTLRFTIPSQFTPRY------GHGPAPAPAR 388
           G +D  +VPW        +F +P+ + PR+      G+  AP P +
Sbjct: 142 GMSDGSVVPWDVTRHCLGKFKVPNLYVPRHEEWRMMGYSYAPVPGK 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,194,162
Number of Sequences: 5004
Number of extensions: 66152
Number of successful extensions: 210
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)