Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP22_F_E08
(872 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1093 + 30825722-30826168,30826457-30826608,30826926-308270... 30 2.8
05_01_0129 - 872127-872681,872762-873070,873180-873347 29 3.7
12_01_0462 - 3629190-3629425,3629765-3630122,3630573-3630796,363... 29 4.9
05_01_0061 - 422914-423027,423114-423149,423250-423324,423412-42... 29 4.9
02_04_0224 - 21059328-21059888,21060388-21060462,21060715-210607... 29 4.9
01_07_0338 - 42840890-42841006,42841101-42841136,42841226-428413... 29 4.9
06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137 29 6.4
01_03_0194 + 13645418-13645790,13645879-13647653 29 6.4
11_01_0499 - 3834300-3835255,3836703-3837540,3837636-3837680 28 8.5
>04_04_1093 +
30825722-30826168,30826457-30826608,30826926-30827048,
30827240-30827384,30828032-30828093,30828373-30828586,
30829671-30830585,30830827-30831076,30831164-30831432
Length = 858
Score = 29.9 bits (64), Expect = 2.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 127 GTIYSSVGRSSLCIVEWFNNELQV 198
G +YSSVG+ S+ + W + +LQ+
Sbjct: 407 GFVYSSVGKDSILVTAWGSGQLQI 430
>05_01_0129 - 872127-872681,872762-873070,873180-873347
Length = 343
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +3
Query: 774 DFSRAPLCSDAAVDSWL--HYFELD 842
D S+A LC D VDSWL ++ELD
Sbjct: 262 DESQAVLCPDVEVDSWLGIDFYELD 286
>12_01_0462 -
3629190-3629425,3629765-3630122,3630573-3630796,
3631375-3631552
Length = 331
Score = 29.1 bits (62), Expect = 4.9
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +2
Query: 119 KEKELYTPPLDEVACVLSNGLTTNFKFVEVSVADSPDLTEPPYYLK-SPGLTGDAKLVEI 295
+E+E TP + + C N T KF + S + D PPYYL S K++EI
Sbjct: 33 EEEEDCTPLPNGLICSRQNWETMYGKFADASPMRNTDRPVPPYYLPISMMQFFSVKVIEI 92
Query: 296 GG 301
G
Sbjct: 93 MG 94
>05_01_0061 -
422914-423027,423114-423149,423250-423324,423412-423465,
423554-423620,423912-424025,424114-424215,424220-424269,
424380-424424,424559-424642,424996-425100,425300-425443,
425535-425643,425738-425766
Length = 375
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +3
Query: 387 SSPALEPDRGRTWA*TAR 440
S P LEPDRG TW T R
Sbjct: 236 SQPGLEPDRGLTWQMTKR 253
>02_04_0224 -
21059328-21059888,21060388-21060462,21060715-21060798,
21060866-21061183,21061511-21061722,21061766-21062030
Length = 504
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 230 LTEPPYYLKSPGL-TGDAKLVEIGGPPYLVPQVKRD 334
+ +PPY +++ G +G KL++ PY VP KRD
Sbjct: 324 ICDPPYGVRAGGRKSGGRKLIKGTVAPYTVPDEKRD 359
>01_07_0338 -
42840890-42841006,42841101-42841136,42841226-42841300,
42841380-42841433,42841703-42841769,42841844-42841900,
42842163-42842276,42842354-42842455,42842538-42842653,
42842892-42842975,42843429-42843533,42843732-42843875,
42843961-42844069,42844149-42844177
Length = 402
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +3
Query: 387 SSPALEPDRGRTWA*TAR 440
S P LEPDRG TW T R
Sbjct: 243 SQPGLEPDRGLTWQMTKR 260
>06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137
Length = 542
Score = 28.7 bits (61), Expect = 6.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 321 CGTKYGGPPISTSLASPVNPGD 256
C ++GGPP +S+A PV G+
Sbjct: 200 CQVRWGGPPSKSSIADPVLTGE 221
>01_03_0194 + 13645418-13645790,13645879-13647653
Length = 715
Score = 28.7 bits (61), Expect = 6.4
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +2
Query: 308 YLVPQVKRDKIYDLAKLLEHLNRDPAFLAGAGAGPWPYLGVNCEGIVNLSVRNGTVDQGT 487
Y+V V RDK Y+L LE ++ + AF A P +G+N I+ +V NG +
Sbjct: 71 YVVSYVGRDKYYNLFHGLECVD-NRAFCLLLWAALLPMVGMNTSSILT-AVHNGNEELPD 128
Query: 488 RIVS 499
I+S
Sbjct: 129 IIIS 132
>11_01_0499 - 3834300-3835255,3836703-3837540,3837636-3837680
Length = 612
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +3
Query: 564 ETRTALLGNYLLTEGKPGKVIKVVAKNRTGKSNFITSIRETLKTHYGDKVVGLGGA 731
E RT L G + E +PG+V+ V+ + +GKS ++ + L + V+ G A
Sbjct: 54 EERTILKG--ITGEARPGEVLAVLGPSGSGKSTLLSILGGRLAGRHAGTVLAGGRA 107
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,575,428
Number of Sequences: 37544
Number of extensions: 516581
Number of successful extensions: 1930
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1929
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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