Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_E06
         (901 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   3.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   3.8  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   5.0  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   5.0  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   5.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.6  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 198 SWSRRAFSKGRRGVTYVFENTDGTL 124
           S++  + S  +  +TYV++N +GTL
Sbjct: 201 SFAIESISYEQTAITYVWKNDEGTL 225


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 198 SWSRRAFSKGRRGVTYVFENTDGTL 124
           S++  + S  +  +TYV++N +GTL
Sbjct: 201 SFAIESISYEQTAITYVWKNDEGTL 225


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 198 SWSRRAFSKGRRGVTYVFENTDGTL 124
           S++  + S  +  +TYV++N +GTL
Sbjct: 252 SFAIESISYEQTAITYVWKNDEGTL 276


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 198 SWSRRAFSKGRRGVTYVFENTDGTL 124
           S++  + S  +  +TYV++N +GTL
Sbjct: 201 SFAIESISYEQTAITYVWKNDEGTL 225


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 610 RWRSSWNV-SRGRTSARDRVAEPPMMKRKIXKTIN 711
           ++R +W   SR RT  R+R  EP ++     KTI+
Sbjct: 58  KYRETWKERSRDRTE-RERSREPKIISSLSNKTIH 91


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 610 RWRSSWNV-SRGRTSARDRVAEPPMMKRKIXKTIN 711
           ++R +W   SR RT  R+R  EP ++     KTI+
Sbjct: 58  KYRETWKERSRDRTE-RERSREPKIISSLSNKTIH 91


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 610 RWRSSWNV-SRGRTSARDRVAEPPMMKRKIXKTIN 711
           ++R +W   SR RT  R+R  EP ++     KTI+
Sbjct: 58  KYRETWKERSRDRTE-RERSREPKIISSLSNKTIH 91


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 617 GRPGTCQEEEPPQGT 661
           G+PG C   +P +GT
Sbjct: 495 GKPGLCDAMKPTKGT 509


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,448
Number of Sequences: 438
Number of extensions: 4756
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)