Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP22_F_E04
(883 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0535 + 4208410-4208661,4209529-4209627,4210125-4210265,421... 206 1e-53
04_01_0110 + 1123238-1123450,1124211-1124997,1126126-1126403 47 2e-05
02_05_0689 - 30937621-30937665,30938143-30938208,30938303-309383... 46 3e-05
06_01_0981 + 7613381-7614086,7614203-7614282,7614883-7614960,761... 41 0.002
08_02_0242 - 14701116-14702666 29 4.9
>12_01_0535 +
4208410-4208661,4209529-4209627,4210125-4210265,
4210378-4210560,4210664-4210821,4210905-4211004,
4211085-4211196,4211241-4211419,4211489-4211674,
4211762-4211929
Length = 525
Score = 206 bits (504), Expect = 1e-53
Identities = 102/231 (44%), Positives = 137/231 (59%)
Frame = +2
Query: 173 EFPGARAPYVSEMKFFNETSYEPIPIYRVMDNNGQIIDKNEEPNLDKATLINMYKTMVQL 352
+FPG + +V+EM F E+ + I YRV+D++G+ I + + K + MY M L
Sbjct: 121 DFPGGKVSFVAEMNFLPESQRDRINCYRVLDDDGRTISGSRFQEVSKELALKMYNEMATL 180
Query: 353 SHMDKILYESQRQGRISFYMTNYGEEGIHIGSASALSPKDLVFSQYREVGVFLYRGMTVT 532
MD I +E+QRQGRISFY+T++GEE I+I SA+AL+ D+V QYRE GV L+RG T+
Sbjct: 181 QVMDTIFFEAQRQGRISFYLTSHGEEAINIASAAALTIDDIVLPQYREPGVLLWRGFTLQ 240
Query: 533 ELVNQCYGNCEDPGKGRQMPVHYGSKHHNMVTISSPLGTQMPQAVGAAYAYKRVPE*RPX 712
E NQC+GN D GKGRQMP+HYGS N T+SSP+ TQ+P AVGAAY+ K + +
Sbjct: 241 EFANQCFGNKLDYGKGRQMPIHYGSNRLNYFTVSSPIATQLPHAVGAAYSLK-MDKKDAC 299
Query: 713 XXXXXXXXXXXXXXXXXXFQLCRYVRLSCYMLCRNNGYAISTPPSEQYXGD 865
+ CRNNG+AISTP SEQ+ D
Sbjct: 300 AITYFGDGGTSEGDFHAALNFAAVMEAPVIFFCRNNGWAISTPTSEQFRSD 350
Score = 53.2 bits (122), Expect = 3e-07
Identities = 22/33 (66%), Positives = 24/33 (72%)
Frame = +3
Query: 705 DRCVICYFGDGAASEGDAHAAFNFAATLDCPVI 803
D C I YFGDG SEGD HAA NFAA ++ PVI
Sbjct: 297 DACAITYFGDGGTSEGDFHAALNFAAVMEAPVI 329
>04_01_0110 + 1123238-1123450,1124211-1124997,1126126-1126403
Length = 425
Score = 47.2 bits (107), Expect = 2e-05
Identities = 30/123 (24%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
Frame = +2
Query: 323 INMYKTMVQLSHMDKILYESQRQGRISFYMTNY-GEEGIHIGSASALSPKDLVFSQYREV 499
+ +Y+ MV + + + +G++ ++ Y G+E + G L+ D V S YR+
Sbjct: 79 LELYEDMVLGRIFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLNQADCVVSTYRDH 138
Query: 500 GVFLYRGMTVTELVNQCYGNCEDPGKGRQMPVHYGSKHHNMVTISSPLGTQMPQAVGAAY 679
L +G+ ++ + +G +G+ +H S+ HN++ + +G +P A GAA+
Sbjct: 139 VHALSKGVPARSVMAELFGKATGCCRGQGGSMHMFSEPHNLLGGFAFIGEGIPVATGAAF 198
Query: 680 AYK 688
A K
Sbjct: 199 AAK 201
>02_05_0689 -
30937621-30937665,30938143-30938208,30938303-30938356,
30938489-30938560,30938648-30938743,30939883-30939960,
30940485-30940564,30940662-30941343
Length = 390
Score = 46.4 bits (105), Expect = 3e-05
Identities = 41/206 (19%), Positives = 79/206 (38%), Gaps = 3/206 (1%)
Frame = +2
Query: 230 SYEPIPIYRVMDNNGQIIDK-NEEPNLDKATLINMYKTMVQLSHMDKILYESQRQGRI-- 400
S P+ I + I+D + + A L+ ++ M + M+ I +S + ++
Sbjct: 29 STAPLTIETSVPFTSHIVDPPSRDVTTTPAELLTFFRDMSVMRRME-IAADSLYKAKLIR 87
Query: 401 SFYMTNYGEEGIHIGSASALSPKDLVFSQYREVGVFLYRGMTVTELVNQCYGNCEDPGKG 580
F G+E + +G +A++ D + + YR+ +L RG + + G +G
Sbjct: 88 GFCHLYDGQEAVAVGMEAAITRSDSIITAYRDHCTYLARGGDLVSAFAELMGRQAGCSRG 147
Query: 581 RQMPVHYGSKHHNMVTISSPLGTQMPQAVGAAYAYKRVPE*RPXXXXXXXXXXXXXXXXX 760
+ +H+ K N +G Q+P G A+A K E
Sbjct: 148 KGGSMHFYKKDANFYGGHGIVGAQVPLGCGLAFAQKYRKE-ETATFALYGDGAANQGQLF 206
Query: 761 XXFQLCRYVRLSCYMLCRNNGYAIST 838
+ +L ++C NN Y + T
Sbjct: 207 EALNISALWKLPAILVCENNHYGMGT 232
>06_01_0981 +
7613381-7614086,7614203-7614282,7614883-7614960,
7615166-7615261,7615370-7615441,7615676-7615729,
7615819-7615884,7616291-7616335
Length = 398
Score = 40.7 bits (91), Expect = 0.002
Identities = 29/139 (20%), Positives = 53/139 (38%)
Frame = +2
Query: 422 GEEGIHIGSASALSPKDLVFSQYREVGVFLYRGMTVTELVNQCYGNCEDPGKGRQMPVHY 601
G+E + +G +A + D + + YR+ +L RG + L + G +G+ +H
Sbjct: 103 GQEAVAVGMEAATTRADAIITAYRDHCAYLARGGDLAALFAELMGRRGGCSRGKGGSMHL 162
Query: 602 GSKHHNMVTISSPLGTQMPQAVGAAYAYKRVPE*RPXXXXXXXXXXXXXXXXXXXFQLCR 781
K N +G Q+P G A+A +R + +
Sbjct: 163 YKKDANFYGGHGIVGAQVPLGCGLAFA-QRYRKEAAVTFDLYGDGAANQGQLFEALNMAA 221
Query: 782 YVRLSCYMLCRNNGYAIST 838
+L ++C NN Y + T
Sbjct: 222 LWKLPVVLVCENNHYGMGT 240
>08_02_0242 - 14701116-14702666
Length = 516
Score = 29.1 bits (62), Expect = 4.9
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Frame = -2
Query: 336 LYMLISVALSKFGSSFLSMICPLLSITR*IGIGS*LVSLK----NFISLTYGALAPGNSA 169
+++LIS A +K ++ L + CP ++ + + S + +L+ + +S +YG P +
Sbjct: 213 VHLLISAAKTKEETAVLRLRCPTVTTLVLVAVTSRIEALQLDAPSLVSFSYGG-HPMAIS 271
Query: 168 ILPPPFCAVSGLVRVDKSLAARRKAFNLTKLAPVFNAILRL 46
+ PPP A LV VD S R +F K PV + L
Sbjct: 272 LAPPP--ANLALVDVDIS----RPSFFTWKYEPVCRVLRSL 306
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,490,767
Number of Sequences: 37544
Number of extensions: 495049
Number of successful extensions: 1225
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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