Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_E03
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   197   2e-51
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   197   2e-51
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    29   1.1  
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit...    27   3.4  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   4.5  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   7.9  

>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score =  197 bits (480), Expect = 2e-51
 Identities = 95/166 (57%), Positives = 111/166 (66%)
 Frame = +1

Query: 103 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 282
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 283 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 462
                              TYGKP   GVN LK  R+ +  AEE            +SYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120

Query: 463 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTS 600
           V QD++YK+FEVILVDPSHKAIRRDP+INWIVN VHKHRE RGLTS
Sbjct: 121 VNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTS 166



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 605 GRSSRGLGKGHRYXSNKGRLT 667
           G+ SRG+GKGHR+ ++    T
Sbjct: 168 GKKSRGIGKGHRFNNSPQHAT 188


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score =  197 bits (480), Expect = 2e-51
 Identities = 95/166 (57%), Positives = 111/166 (66%)
 Frame = +1

Query: 103 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 282
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 283 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 462
                              TYGKP   GVN LK  R+ +  AEE            +SYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120

Query: 463 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTS 600
           V QD++YK+FEVILVDPSHKAIRRDP+INWIVN VHKHRE RGLTS
Sbjct: 121 VNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTS 166



 Score = 29.9 bits (64), Expect = 0.49
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 605 GRSSRGLGKGHRYXSNKGRLT 667
           G+ SRG+GKGHRY ++    T
Sbjct: 168 GKKSRGIGKGHRYNNSPQHAT 188


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 464 LHKILHTSISRLSSWTRHTRPFVAILRSTGS*MLYISI 577
           L+KIL  S  ++ ++T H  P V ++ S     LYIS+
Sbjct: 47  LYKILQISAPKVGNFTIHDAPVVGLIDSILEYYLYISV 84


>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
           Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 354

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
 Frame = -3

Query: 162 THN---IAQFFPI--QLLNISVGTHLSSLWQTSRVSHTVNRKSKILRDS 31
           THN   I +F P   +L+N ++G  ++SLW  + V         +L DS
Sbjct: 101 THNCEIIEKFNPTPGELINANIGQAITSLWSANSVRSCTYGNDSVLIDS 149


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 469  QDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHK 573
            +  S KY E     P H  +   PK  WI++ +HK
Sbjct: 1182 KSESNKYQEQAYSTPLHHTLNVLPKNKWILSRMHK 1216


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 8/31 (25%), Positives = 20/31 (64%)
 Frame = -3

Query: 129 LLNISVGTHLSSLWQTSRVSHTVNRKSKILR 37
           ++ +S G +  S+W + R+SHT+  +  +++
Sbjct: 511 IIYLSFGVNKLSVWNSERISHTLELQDILVK 541


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,095,070
Number of Sequences: 5004
Number of extensions: 59996
Number of successful extensions: 138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)