Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_E02
         (871 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0655 + 24761323-24761424,24761565-24761675,24762361-247624...    85   7e-17
12_02_0717 + 22481418-22482692,22482895-22482915                       29   4.8  
11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257     29   6.4  
04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925           29   6.4  
01_02_0039 - 10490522-10490606,10490674-10490810,10491107-104912...    28   8.5  

>02_04_0655 +
           24761323-24761424,24761565-24761675,24762361-24762472,
           24763049-24763113,24763727-24763804,24764550-24764624,
           24764747-24764899,24764988-24765122,24765325-24765495
          Length = 333

 Score = 85.0 bits (201), Expect = 7e-17
 Identities = 48/122 (39%), Positives = 74/122 (60%), Gaps = 3/122 (2%)
 Frame = +2

Query: 341 RHLNLQEHHSKDLLRKYQVSIQDFRIIDSKLDT-NALSG-FKAD-EYVVKAQILAGGRGK 511
           R LN+ E+   +L+ KY +++       S  +  N L   F ++ E VVK+QILAGGRG 
Sbjct: 26  RRLNIHEYQGAELMGKYGINVPRGAAAGSVEEVKNTLKNVFPSEKEIVVKSQILAGGRGL 85

Query: 512 GHFDNGFKGGVHLTKNRDKIVDLAKNMIGNKLITKQTPKEGILVNKVMVAESVNIKRETY 691
           G F +G +GGVH+ K  ++   LA  M+G  L+TKQT  +G +V+KV + E +++  E Y
Sbjct: 86  GTFKSGLQGGVHIVK-AEEAESLAAKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMY 144

Query: 692 FS 697
           F+
Sbjct: 145 FA 146



 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 22/56 (39%), Positives = 36/56 (64%)
 Frame = +3

Query: 699 IVMERSFNGAAIVASPAGGMDIEAVAEKTPHLVKTVPVDIFEGISDKVANEIAEFL 866
           I ++R+  G  I+A   GG  IE +AEK P ++  VP+D+F+GI+D  A ++ + L
Sbjct: 147 ITLDRNTAGPLIIACSKGGTSIEDLAEKYPDMIIKVPIDVFKGITDDDAAKVVDGL 202


>12_02_0717 + 22481418-22482692,22482895-22482915
          Length = 431

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 726 AAIVASPAGGMDIEAVAEKTPHLVKTVPVDIFEGISDKVANEI 854
           A  +  P   +   A+  +T  L+ T+PV +   +S +VANE+
Sbjct: 261 AGYLRDPHTALATAAIVIQTTSLLYTIPVTLSSAVSTRVANEL 303


>11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257
          Length = 921

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 302 LASSTYC-PRVISTRHLNLQEHHSKDLLRKYQVSIQDF 412
           LA+++ C PR +   H+ ++ HH+ D+ +     +Q F
Sbjct: 263 LATTSRCKPRAVQAAHIRIKGHHASDIYQVGHAILQAF 300


>04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925
          Length = 962

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 233 WLRFS*NKIMAAFKNLKSFKLINLASSTYCPRV-ISTRHLNLQ 358
           W R + N+I  AF+NL++ ++I    S +   + + TRHL LQ
Sbjct: 287 WDREAYNQIHDAFQNLQASRIIITTRSKHVAALALPTRHLKLQ 329


>01_02_0039 -
           10490522-10490606,10490674-10490810,10491107-10491248,
           10491355-10491419,10491528-10491641,10491846-10492119,
           10492215-10492327,10492405-10492499,10492602-10492662,
           10492774-10493103
          Length = 471

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +1

Query: 535 RGSSSYKKSGQDCRLS 582
           +GSSSYKK+G+ C +S
Sbjct: 122 KGSSSYKKNGESCSIS 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,696,530
Number of Sequences: 37544
Number of extensions: 348500
Number of successful extensions: 747
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)