Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_D24
         (940 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0922 - 21593030-21593225,21593319-21594142                       29   5.3  
01_01_0224 - 1905978-1907084,1907489-1908070,1908653-1908667           28   9.3  

>10_08_0922 - 21593030-21593225,21593319-21594142
          Length = 339

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
 Frame = -3

Query: 893 PPXXPTXLIPRGVGXFFXXQEKXSPXPPPXDPXXXKNEXXL-XXFKLFFXRFXRXYXXXQ 717
           PP  P   +      +F  Q++  P PPP  P        L   ++  F  F R Y   Q
Sbjct: 207 PPPPPVAELNPMASPWFPVQQQEQPPPPPPQPHQQHGYIPLPEDYRSLFITFSRGYPIRQ 266


>01_01_0224 - 1905978-1907084,1907489-1908070,1908653-1908667
          Length = 567

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 386 ILKLTSRLNNTSIYGVRFKDHFPIALAEPRTSIAGPA 276
           +LKL  R   T+I  V+ ++ FPI     +T+I  PA
Sbjct: 206 VLKLGRRTGGTAIRVVQVENSFPIGACINKTAIQNPA 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,593,065
Number of Sequences: 37544
Number of extensions: 257891
Number of successful extensions: 443
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)