Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_D19
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe...    29   0.67 
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    29   0.67 
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom...    29   0.88 
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    27   2.7  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    27   4.7  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    27   4.7  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    26   6.2  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   6.2  

>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 19/66 (28%), Positives = 34/66 (51%)
 Frame = +3

Query: 222 LKYVVFGALYYYRKYSSKNSAAGNDGRAGQGVKAIADPADMERAQPLSDHAKAFDAIFFI 401
           +K  +FG +    K+ +++ A         G+ A+    D+ERA  +SD  +A   + FI
Sbjct: 393 VKEEIFGPVVAISKFKTEDEAIEKANNTTYGLAAMCFTKDLERAHRVSDELEA--GMVFI 450

Query: 402 SSKSEN 419
           +S +EN
Sbjct: 451 NS-TEN 455


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 14/24 (58%), Positives = 19/24 (79%), Gaps = 2/24 (8%)
 Frame = -3

Query: 512 KTF--SWESDIKQSVAHSHRSSFA 447
           KTF  SW+S +K+S A S+RSSF+
Sbjct: 127 KTFRDSWKSSLKESYAFSNRSSFS 150


>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
 Frame = +3

Query: 111 FADIIHIIYNFY*PTPSSLKIANRY----LVSTPXPGKWYYL-KYVVFGALYYYRKYSSK 275
           F+ ++  +Y    P  SS K+ +      L+      KW  L K     ++  Y K S+ 
Sbjct: 230 FSLVLDPLYEEIVPEKSSFKLFSSKVEITLIKKVSEIKWEALVKSPANNSVNVYAKDSNH 289

Query: 276 NSAAGNDGRAGQGVKAIADPADMERAQPLSDHAKA 380
           +SA+GN     +   ++A  AD+E  +P  + A A
Sbjct: 290 SSASGNTKNKAKDWDSLAKLADLEEDEPTGEAALA 324


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -3

Query: 590 HLDPFSAELSYFSPKKDCVRYLLAAEKTFSWESDIKQSVAHSHRSSFAAA 441
           HL  F  +  Y S  K     LL A   +   + I    +HS+ SSF A+
Sbjct: 67  HLQNFQDQFDYSSVLKTPFNPLLEANSAYFLSNQISLPDSHSYASSFDAS 116


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 258 RKYSSKNSAAGNDGRAGQGVKAIADPADME 347
           + YS     + N  ++GQ + A+A+ AD+E
Sbjct: 208 KSYSENQKISKNKEKSGQSLAALAEEADLE 237


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 530 YLLAAEKTFSWESDIKQSVAHSHRSSFAAAND 435
           Y     K  SW ++ ++ + +S R S+A  ND
Sbjct: 418 YCYVTVKITSWRTEARRKMVNSWRESYAVQND 449


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 705 TKYFDFDTDLYPATVIRSIAXEKWSREYFELL 800
           +K+ D  +D+YP  +I  +    W  EY + L
Sbjct: 272 SKHVDSFSDVYPTCIIHILEKGIWGPEYIKFL 303


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
 Frame = -1

Query: 478 PLHIPIGLRSQPLMMYTPFPFSLFDDIKNIASKALAWSLNG--CARSMSAGSAMALTPCP 305
           P HIP+G  S PL     +  S  DDIK+ A      SL     A+S S  ++  L P  
Sbjct: 537 PSHIPLGTASLPL-KGNLYQISRSDDIKSGAPVLDTSSLVNPTLAKSASLNNSSLLNPSS 595

Query: 304 A--RPSLPAAEFLL 269
           +  R  +PA +  +
Sbjct: 596 SLLRREVPAGKLTM 609


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,438,953
Number of Sequences: 5004
Number of extensions: 71140
Number of successful extensions: 211
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)