Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_D18
         (931 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    28   2.2  
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po...    26   6.6  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    26   6.6  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    26   8.7  
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    26   8.7  

>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 483 EKSKPHPATTDYLSFAKWKPLMRL 554
           +K KP P+T DY ++ K +P  RL
Sbjct: 255 KKHKPLPSTLDYTAYVKKRPTHRL 278


>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 116 FWRLPVPPLRGVSKQYRSDYVYNKDTNAF--YKLHTDSAKIWDAKSSCTTEGAQLM 277
           FW L      G+SK  +  Y +   ++ F  Y+LH  +A  +DA+ S    G  L+
Sbjct: 31  FWILRFFVRSGLSKFSKFVYAFASISSGFLHYQLHRAAAPKYDARGSLLYVGQDLL 86


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 359 DEDGKDHESAEEQPMIDLSDSV 424
           D D +D E +E+ P+ID S+SV
Sbjct: 28  DSDKEDGEISEDDPVIDQSNSV 49


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
 Frame = +2

Query: 218 DSAKIWDAKSSCTTEGAQLMVPASEQDIIQLHSMFKRFPDLGNYVWVDEDGKDHES--AE 391
           D  ++W A         QL +   E D      M K   D+G+      D  D+ES  +E
Sbjct: 722 DEDEVWKA---LVDSKPQLEMDEEESDF-DSEEMDKAMTDMGSDSEQSADENDNESMASE 777

Query: 392 EQPMIDLSDSVTEAMRS 442
           E+PM    ++++E   S
Sbjct: 778 EKPMFSDEENLSEIAHS 794


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +2

Query: 380 ESAEEQPMIDLSDSVTE 430
           +S EE+P+IDL+DS+ E
Sbjct: 24  QSNEEKPLIDLNDSLDE 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,399,709
Number of Sequences: 5004
Number of extensions: 71046
Number of successful extensions: 192
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)