Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_D13
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    28   2.0  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    27   3.4  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    26   6.0  

>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = -2

Query: 225 DQTYPVPHEIFFEAMFPQLMHETASRERFGFRTN---ARGQPKRK*LTSAFRSYL 70
           D+TY +  ++  E     ++  T+SR+  G   +   A+G PK K     FRS+L
Sbjct: 558 DETYLIGEDLVVEDSQGNIISHTSSRDANGPSIDEKLAQGDPKAKSFGRKFRSFL 612


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 71  RYDRNAEVNYFRFGCPRALVL 133
           RYD N +   FRFG  R+L++
Sbjct: 741 RYDANVQAEDFRFGTDRSLIV 761


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 723 CMLSASFLTFSITQKLT 673
           C++S SFLTF++  KLT
Sbjct: 493 CIVSVSFLTFTVYAKLT 509


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,873,558
Number of Sequences: 5004
Number of extensions: 54780
Number of successful extensions: 123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)