Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_C24
         (955 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1015 + 33512023-33512359,33513550-33514082                       91   2e-18
02_05_1014 + 33510108-33510471,33510857-33511362                       57   2e-08
01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620...    30   3.1  
12_01_0964 + 9685989-9686459                                           29   7.2  
04_04_1575 + 34548774-34549109,34549979-34550185                       28   9.5  
04_03_0872 + 20452534-20453271                                         28   9.5  

>02_05_1015 + 33512023-33512359,33513550-33514082
          Length = 289

 Score = 90.6 bits (215), Expect = 2e-18
 Identities = 63/206 (30%), Positives = 95/206 (46%), Gaps = 16/206 (7%)
 Frame = +1

Query: 196 WADEVEIDQG----VLPPP--SEVVENGLKIVTEYKYDNDNKKVKIVRTYKIEKRV---V 348
           W +  E D+G    +LPP   S   ENG K V EY++D+   KVK+ RT+++ K     +
Sbjct: 12  WGELEEDDEGDLDFLLPPRVVSGPDENGFKKVVEYRFDDKGNKVKVTRTFRVRKIARARL 71

Query: 349 SKSIAKRKTWSKFGDSASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPPS 528
           SKS  +R++W KFGD+  +  G      +  E V  +      +++ P     D L   S
Sbjct: 72  SKSAIERRSWPKFGDAVQEDVGARLTMVSTEEIVLERPRAPGSKAEEP-SASGDPLASKS 130

Query: 529 SNVIFKCRTC--QGDHLTLYCPFK----HTQIXXXXXXXXXXXXXXXXXXSNKYIPPS-S 687
             V+  CRTC  +GDH T  CP+K     T+                      Y+PPS  
Sbjct: 131 GAVLMVCRTCGKKGDHWTSKCPYKDLAPQTEAFVDRPPTADGSGPPGGAVKGAYVPPSMR 190

Query: 688 AGRIPGRDQPPVRREDVTAIRISNLS 765
           +G +        RR D  ++R++NLS
Sbjct: 191 SGAVDRVGHDMRRRNDENSVRVTNLS 216


>02_05_1014 + 33510108-33510471,33510857-33511362
          Length = 289

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 45/189 (23%), Positives = 82/189 (43%), Gaps = 12/189 (6%)
 Frame = +1

Query: 235 PPSEVV---ENGLKIVTEYKYDNDNKKVKIVRTYKIEKRV---VSKSIAKRKTWSKFGDS 396
           PP  V+   ENG+K   EY+ + + K V++  T ++ +     V+K  A+R+ W+KFGD+
Sbjct: 36  PPRVVIGPDENGIKKTVEYRLNEEGKAVRVTTTTRVREVARTRVTKRAAERRGWAKFGDA 95

Query: 397 ASDKPGPNPATTNVAEDVFMQFITSKEESQRPDDGELDGLKPPSSNVIFKCRTCQGDHLT 576
           A +       T    E++ ++         + +D  +  L   ++ ++ +    +G H T
Sbjct: 96  AHNDDAGARLTVVSPEEIVLE--RPSAPGSKSEDPLIPALDKGAALMVCRICNAKGKHWT 153

Query: 577 LYCP---FKHTQIXXXXXXXXXXXXXXXXXXSN---KYIPPSSAGRIPGRDQPPVRREDV 738
             CP   F   Q+                   +   KY+PP        R+    RR D 
Sbjct: 154 SKCPNKDFAPLQLDALVDNNIPPNSGGDNGGGSRPGKYVPPKP------RESEMRRRNDE 207

Query: 739 TAIRISNLS 765
            ++R++NLS
Sbjct: 208 NSVRVTNLS 216


>01_07_0248 +
           42261373-42261609,42261733-42261905,42261986-42262058,
           42262148-42262282,42262352-42262562,42262886-42263034,
           42263169-42263267,42263821-42263989,42264176-42264308,
           42264600-42264694,42264774-42264882,42265136-42265295,
           42265433-42265594,42265814-42265985,42266254-42266402,
           42266914-42266951,42267779-42267839,42267913-42268155,
           42268233-42268315,42269521-42269609,42270449-42270495,
           42270576-42270656,42270737-42270899,42271077-42271267,
           42271691-42271762
          Length = 1097

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
 Frame = +1

Query: 163 DMPVAEEFQASWADEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKV-KIVRTYKIEK 339
           D  +  E +A+WA      Q VL P   +    LK       D    +V  + + YKI +
Sbjct: 698 DQELLAEAEAAWAQREWTIQHVLFPSMRLF---LKPPKSMATDGTFVQVASLEKLYKIFE 754

Query: 340 RVVSKSIAKRKTWSKFGDSASDKPGPNPA 426
           R + KS  K  T + F +S    P  NP+
Sbjct: 755 RSLQKSKRKANTPTNFLESLQTTPDQNPS 783


>12_01_0964 + 9685989-9686459
          Length = 156

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -1

Query: 235 VEVHLGQSRPHQPRKPEILQQQACRNIYFIHQLLFCNL--SYEVIIDR 98
           VE+   QS   Q R  +++QQQ C+ +  I Q   C    S +VI+ +
Sbjct: 58  VEIPFFQSPVFQLRNCQVMQQQCCQQLRMIAQQSHCQAVSSVQVIVQQ 105


>04_04_1575 + 34548774-34549109,34549979-34550185
          Length = 180

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +1

Query: 163 DMPVAEEFQASWADEVEIDQGVLPPPSEVVENGLKIVTEYKYDNDNKKVKIVRTYKI 333
           D+PV  +F A W     +   V+   +E  E  LKIV   K D+D    +++  YK+
Sbjct: 85  DLPVLVDFVADWCGPCRLIAPVVDWAAEEYEGRLKIV---KIDHD-ANPQLIEEYKV 137


>04_03_0872 + 20452534-20453271
          Length = 245

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 477 FLTGDELHEDIFSYISSSRVRP 412
           F+ GDELHED F + SS    P
Sbjct: 31  FVAGDELHEDDFLFSSSPAAPP 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,185,534
Number of Sequences: 37544
Number of extensions: 443985
Number of successful extensions: 1245
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2752963900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)