Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_C23
         (915 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071724-1|AAL49346.1|  121|Drosophila melanogaster RH40291p pro...    32   1.3  
AE014297-3068|AAF55934.1|  121|Drosophila melanogaster CG17820-P...    32   1.3  
AY094967-1|AAM11320.1| 1711|Drosophila melanogaster SD07675p pro...    29   6.7  
AE013599-3504|AAF46928.2| 1711|Drosophila melanogaster CG3820-PA...    29   6.7  
AF024604-1|AAB82274.1| 1751|Drosophila melanogaster transcriptio...    29   8.9  
AF024603-1|AAB82273.1| 1773|Drosophila melanogaster transcriptio...    29   8.9  

>AY071724-1|AAL49346.1|  121|Drosophila melanogaster RH40291p
           protein.
          Length = 121

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = +1

Query: 91  MNSKLLYFFATVLVCVNAE-VYWEDEEGYPVSGQFSKRHPRDVTWDKQVG 237
           MNS L+    + L  V A  + W +E+        S  HP  V W   VG
Sbjct: 1   MNSTLVILLLSALALVQARNIRWSEEDNSSQGPSLSHPHPHSVNWPCDVG 50


>AE014297-3068|AAF55934.1|  121|Drosophila melanogaster CG17820-PA
           protein.
          Length = 121

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = +1

Query: 91  MNSKLLYFFATVLVCVNAE-VYWEDEEGYPVSGQFSKRHPRDVTWDKQVG 237
           MNS L+    + L  V A  + W +E+        S  HP  V W   VG
Sbjct: 1   MNSTLVILLLSALALVQARNIRWSEEDNSSQGPSLSHPHPHSVNWPCDVG 50


>AY094967-1|AAM11320.1| 1711|Drosophila melanogaster SD07675p protein.
          Length = 1711

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -3

Query: 547  FETIPPAERRVFLSRSHTPE--PVAVIPDLPPICLFISIAAS 428
            F +IP AE  VF   +  P     A  PD PP  LF S A S
Sbjct: 1388 FGSIPKAETSVFGGATTAPSNTTAAATPDAPPAGLFASAAIS 1429


>AE013599-3504|AAF46928.2| 1711|Drosophila melanogaster CG3820-PA
            protein.
          Length = 1711

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -3

Query: 547  FETIPPAERRVFLSRSHTPE--PVAVIPDLPPICLFISIAAS 428
            F +IP AE  VF   +  P     A  PD PP  LF S A S
Sbjct: 1388 FGSIPKAETSVFGGATTAPSNTTAAATPDAPPAGLFASAAIS 1429


>AF024604-1|AAB82274.1| 1751|Drosophila melanogaster transcriptional
           co-repressor SIN3A protein.
          Length = 1751

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +3

Query: 381 DSTNYGGRLDWANKNAEAAIDINRQIGGRSGMTATGS-GVWDLDKNTRLSAGGMVSKGIR 557
           DST  GG +      A+ A+ I    GGRS + +TGS G   L   T  S   + + G  
Sbjct: 109 DSTTAGGPV---GAGAQVAVGIGSAAGGRSVVVSTGSTGTQTLQYTTSYSVASIQAGGTL 165

Query: 558 SQKT 569
              T
Sbjct: 166 KANT 169


>AF024603-1|AAB82273.1| 1773|Drosophila melanogaster transcriptional
           co-repressor SIN3A protein.
          Length = 1773

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +3

Query: 381 DSTNYGGRLDWANKNAEAAIDINRQIGGRSGMTATGS-GVWDLDKNTRLSAGGMVSKGIR 557
           DST  GG +      A+ A+ I    GGRS + +TGS G   L   T  S   + + G  
Sbjct: 109 DSTTAGGPV---GAGAQVAVGIGSAAGGRSVVVSTGSTGTQTLQYTTSYSVASIQAGGTL 165

Query: 558 SQKT 569
              T
Sbjct: 166 KANT 169


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,464,246
Number of Sequences: 53049
Number of extensions: 639175
Number of successful extensions: 1722
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1722
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4484945457
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)