Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP22_F_C21
(885 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0234 + 15187065-15188241,15188316-15188494 52 6e-07
04_03_0649 - 18402976-18403220,18403305-18404499 42 7e-04
10_08_0009 + 14075929-14076789 32 0.70
01_01_1161 + 9244628-9245748,9247696-9247828,9248233-9248448,924... 32 0.70
12_02_0189 + 15165485-15168694 29 5.0
08_02_0045 - 11560147-11560434,11560949-11560960,11561079-115611... 29 5.0
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873... 29 5.0
12_02_0431 - 19000267-19000719 29 6.6
03_01_0436 + 3384526-3385236,3387857-3388720 28 8.7
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 52.0 bits (119), Expect = 6e-07
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Frame = +3
Query: 360 TSLKSKYPGLTV--LLSVGGDADTEEPEK--YNLLLESQQARTAFINSGVLLAEQYGFDG 527
+S+KS G V +LS+G D E+ ++ + + R AFINS + LA GFDG
Sbjct: 98 SSIKSSGGGFAVKTILSIGTDEFREDVSNAAFSRMASEKNLRRAFINSSIELARANGFDG 157
Query: 528 IDLAWQFP 551
+DLAW+FP
Sbjct: 158 LDLAWRFP 165
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 41.9 bits (94), Expect = 7e-04
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Frame = +3
Query: 243 SFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITSLKSKYPGLTVLLSVGGD-- 416
S THL Y + P L+ + D RA+ K+K + +LS+G
Sbjct: 62 SMYTHLYYYAVAVHPARRTLLLPPDPAAASLLGDFSRAV---KAKNAAVKTVLSIGRGGG 118
Query: 417 -------ADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGFDGIDLAWQFP 551
A + + + +R AFI + V +A + GFDG+D+AW+FP
Sbjct: 119 AGGAAAVAGSGSDPAFAAMAADPASRAAFIGAAVKVARENGFDGLDVAWRFP 170
>10_08_0009 + 14075929-14076789
Length = 286
Score = 31.9 bits (69), Expect = 0.70
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = +3
Query: 354 AITSLKSKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVL----LAEQYGF 521
A+ + K+ +P L+V+L++GGD T + N + A++ + L + YG
Sbjct: 70 AVAAAKAAHPNLSVILALGGD--TVQNTGVNATFAPTSSVDAWVRNAADSVSGLIDAYGL 127
Query: 522 DGIDLAWQ 545
DG+D+ ++
Sbjct: 128 DGVDVDYE 135
>01_01_1161 +
9244628-9245748,9247696-9247828,9248233-9248448,
9249802-9249957,9250788-9250979,9251118-9251234,
9251822-9252193
Length = 768
Score = 31.9 bits (69), Expect = 0.70
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Frame = +3
Query: 411 GDADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGFDGIDLAWQFPRVKPKKIRSTWGS 590
G + TE Y A +I SG ++ Q G D + W+ + + + W
Sbjct: 431 GGSPTELITSYTESTGRPPALPRWITSGAVVGMQGGTDAVRRVWKQLQDHDVPVSAFWLQ 490
Query: 591 LWHGIKKTFGTTPV---DEKESEHREGFTALVRELKQ 692
W G +KT + + E + +H G+ LVR+L++
Sbjct: 491 DWVGQRKTSIGSQLWWNWEVDDDHYAGWNDLVRDLRR 527
>12_02_0189 + 15165485-15168694
Length = 1069
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 314 REPGHRPNTRQLPCDHQLEIQV 379
REP +TR +PC ++LEIQV
Sbjct: 539 REPVAYKSTRDIPCSNRLEIQV 560
>08_02_0045 -
11560147-11560434,11560949-11560960,11561079-11561102,
11561562-11561801
Length = 187
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 172 LRQQELCQRISSPHAAV-GPRXPLCRSAPTCCTAMPVSSLTPISWCP 309
+R Q+L R+ AA G R P + C A P++SLTP CP
Sbjct: 37 VRVQQLAVRVQQLRAAHHGGRKPHDHHTVSACIASPIASLTP---CP 80
>01_05_0553 + 23185473-23186188,23187096-23187101,23187230-23187374,
23187887-23188159,23188275-23188338,23188479-23188744,
23188951-23189045,23189544-23189718,23190669-23191063,
23191830-23191953,23192864-23192959,23193049-23193120,
23194687-23194824,23195369-23195549,23195602-23195963,
23196944-23197386,23197461-23197763,23197857-23198081,
23198260-23198350,23198702-23198779,23198939-23199229,
23199316-23199513,23199681-23200163,23200488-23200562,
23201163-23201324,23201400-23201729,23201816-23201916,
23202477-23202581,23202931-23203162,23203913-23204257,
23204346-23204447,23206010-23206153,23206463-23206551,
23206979-23207061,23207172-23207287,23207824-23207909,
23208461-23208560,23209270-23209335
Length = 2451
Score = 29.1 bits (62), Expect = 5.0
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = -2
Query: 641 LLIDWRGAECLLNSMPKRSPGRA---DLLRLNSWELPGEVNSIETILFSQQHSGINE 480
LL D R + L++ KR+ G D+ RLNSW L V S+ + Q+ S ++E
Sbjct: 1503 LLPDLRSKQLLVHFFLKRTVGNLSDDDVARLNSWALGLRVLSLLPLPSQQRCSSLHE 1559
>12_02_0431 - 19000267-19000719
Length = 150
Score = 28.7 bits (61), Expect = 6.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2
Query: 842 CCCVSECNNRKRQR 801
CCCVS C R+R+R
Sbjct: 96 CCCVSACGGRRRRR 109
>03_01_0436 + 3384526-3385236,3387857-3388720
Length = 524
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +3
Query: 237 ALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYR--AITSLKSKYPGLTVLLS 404
A+ HLL +A +TY LV EN+ ++ NYR +T+ + G VLLS
Sbjct: 228 AIDLAKHLLQVHA----ETYALVVSTENITLNAYMGNYRPMLVTNTLFRMGGAAVLLS 281
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,069,473
Number of Sequences: 37544
Number of extensions: 470083
Number of successful extensions: 1258
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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