Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_C20
         (870 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70034-12|CAA93859.1|  235|Caenorhabditis elegans Hypothetical p...    59   5e-09
Z68318-9|CAA92698.1|  235|Caenorhabditis elegans Hypothetical pr...    59   5e-09
Z79695-3|CAE17789.1|  162|Caenorhabditis elegans Hypothetical pr...    41   0.001
Z81579-2|CAB04657.1|  323|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AC006673-10|AAP31433.1|  361|Caenorhabditis elegans Serpentine r...    28   10.0 

>Z70034-12|CAA93859.1|  235|Caenorhabditis elegans Hypothetical
           protein C18E9.10 protein.
          Length = 235

 Score = 58.8 bits (136), Expect = 5e-09
 Identities = 36/113 (31%), Positives = 49/113 (43%)
 Frame = +3

Query: 321 FTLSRTQRXXXXXXXXXXXXXXXXXXXXYIPVLLLQARKFAXXXXXXXXXXXXXXXXXYG 500
           F ++RTQR                     IPV+L+  RKFA                  G
Sbjct: 88  FGMTRTQRIIAFFMCIIGAIFCFSTAAVLIPVILVSTRKFAGLNTLGSLLLLLSFAFLLG 147

Query: 501 PWAHLKSMFSKERALTTSIYSITLIATLYCALHLQSTPWTIVCAVLQVMALFW 659
           P ++L  M S +R L T  Y   L ATLY +L L+ST +T++ A+ Q   L W
Sbjct: 148 PKSYLTHMASPQRRLVTVSYLSALFATLYSSLWLKSTIFTLIAAIFQGFTLVW 200


>Z68318-9|CAA92698.1|  235|Caenorhabditis elegans Hypothetical
           protein C18E9.10 protein.
          Length = 235

 Score = 58.8 bits (136), Expect = 5e-09
 Identities = 36/113 (31%), Positives = 49/113 (43%)
 Frame = +3

Query: 321 FTLSRTQRXXXXXXXXXXXXXXXXXXXXYIPVLLLQARKFAXXXXXXXXXXXXXXXXXYG 500
           F ++RTQR                     IPV+L+  RKFA                  G
Sbjct: 88  FGMTRTQRIIAFFMCIIGAIFCFSTAAVLIPVILVSTRKFAGLNTLGSLLLLLSFAFLLG 147

Query: 501 PWAHLKSMFSKERALTTSIYSITLIATLYCALHLQSTPWTIVCAVLQVMALFW 659
           P ++L  M S +R L T  Y   L ATLY +L L+ST +T++ A+ Q   L W
Sbjct: 148 PKSYLTHMASPQRRLVTVSYLSALFATLYSSLWLKSTIFTLIAAIFQGFTLVW 200


>Z79695-3|CAE17789.1|  162|Caenorhabditis elegans Hypothetical
           protein F27D4.7 protein.
          Length = 162

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = +3

Query: 498 GPWAHLKSMFSKERALTTSIYSITLIATLYCALHLQSTPWTIVCAVLQVMALFW 659
           GP   +K MF K R + +S+Y + +  TL   L L+++   I+C   Q +A+ W
Sbjct: 91  GPIGQIKKMFDKSRWIASSMYILFIFLTLLSGLVLKNSLLAIICTAGQYIAMAW 144


>Z81579-2|CAB04657.1|  323|Caenorhabditis elegans Hypothetical
           protein R13H4.5 protein.
          Length = 323

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +2

Query: 95  VKLYLHLHLHPISAKKQENGKSKVRFRSIFASKRKS 202
           V+L   +H+HP SAK    G S V+ R  F  KR S
Sbjct: 7   VRLLSLMHIHPPSAKDAAGGNSIVK-RLKFGKKRNS 41


>AC006673-10|AAP31433.1|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein89 protein.
          Length = 361

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = -1

Query: 345 IVVFCSK*NTLFVLLRT-NCLLCSSESPQYYETGRQALKNL 226
           + +FC   ++LF +  + +CL+C S S QY +T  + LKNL
Sbjct: 304 VKLFC---HSLFTINASIHCLICFSMSHQYRKTFFKCLKNL 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,850,410
Number of Sequences: 27780
Number of extensions: 363949
Number of successful extensions: 884
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)