Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_C13
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    27   3.5  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    27   4.7  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   4.7  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    27   4.7  

>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 698  IFLIVLH*NTKYFKVAVSIPIM*VLP 775
            + L  LH N K+F ++ +IPI+ V P
Sbjct: 957  LILSTLHSNAKFFPISSNIPILSVAP 982


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 284 ILPSKIDDVKLDPNRRYVRSVTNPENNEAS-IESSHHTVDIGLDRP 418
           + P+    + L PN   + S  + ENN+++  +++     IGLDRP
Sbjct: 93  LFPNDNSVIALKPNEEKLNSSLSVENNDSTYTDATLIAPKIGLDRP 138


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +2

Query: 248  NIPRAP-STADHPILPSKIDDVKLDPNRRYVRSVTNPENNEASIESSHHTVDI 403
            ++P AP S A +  LP   ++ K+DP    ++++  P   +A  ++S   VD+
Sbjct: 1939 SMPNAPPSVASNAKLPPASNNRKVDPLEDILQAMPPPTTRKARGKTSKRYVDV 1991


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -3

Query: 378 SMDASLFSGLVTL--RTYLLFGSSFTSSIFEGRIGWSAVLGA 259
           S + SLFS       R    F   F    F G++GW  +LG+
Sbjct: 347 SSNTSLFSNFTFFLSREVPRFSLEFVIRAFGGKVGWDPILGS 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,207,975
Number of Sequences: 5004
Number of extensions: 66825
Number of successful extensions: 213
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)