Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_C13
         (878 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical pr...    29   5.8  
U80840-2|AAK68305.1|  336|Caenorhabditis elegans Hypothetical pr...    29   5.8  
U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein ...    28   7.7  
AF077534-2|AAC26284.1|  648|Caenorhabditis elegans Temporarily a...    28   7.7  
AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily a...    28   7.7  

>Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical
           protein ZK1067.7 protein.
          Length = 373

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +1

Query: 130 QASCQRFIQPTIQATTDTAPDNTYSATSWPGTAMAVSR*QYSSCAEYC-RPSDSSFENRR 306
           Q+SCQ+  QPT Q      P  + S TS     + V++ Q  SC+  C     S+     
Sbjct: 214 QSSCQQACQPTCQ--PQCMPSCSSSCTSNQAPIVIVAQ-QGDSCSNSCSNQCQSACPTPI 270

Query: 307 CEARSKQKVCSQCYQS 354
           C  +   +  SQC  S
Sbjct: 271 CVQQCNSQCQSQCSNS 286


>U80840-2|AAK68305.1|  336|Caenorhabditis elegans Hypothetical
           protein F08D12.7 protein.
          Length = 336

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/70 (21%), Positives = 28/70 (40%)
 Frame = -1

Query: 437 CYGGSRSAGQVQYQLYDGKIQWMPRYFLDW*HCEHTFCLDRASHRRFSKEESDGLQYSAH 258
           C   S S   ++  ++  K  W   Y  ++  C+    LD+ + ++F       +  S  
Sbjct: 234 CISKSCSYNDLERLIFQSKKDWFELYSTEFFICKRKMMLDKPTAKKFPCIGDHNIAGSKK 293

Query: 257 EEYCHLDTAI 228
           EE C   T +
Sbjct: 294 EETCERHTKL 303


>U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein
           ligase protein 1,isoform a protein.
          Length = 1051

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = +2

Query: 248 NIPRAPSTADHPILPSKIDDVKLDPNRRYVRSVTNPENNEASIESSHHTVDIG 406
           N+  +PS   HP  PS    +     RR  RS  +PE+ E+  ESS  T++ G
Sbjct: 91  NLDMSPSRR-HPGRPSSSATISNSARRRRYRSCNSPEHLES--ESSQLTLESG 140


>AF077534-2|AAC26284.1|  648|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 218, isoform b protein.
          Length = 648

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 336 FAVLPIQKITRHPLNLPIIQLILDLTGRSRATVTQGTCGFGTLERNC 476
           F +LP+Q++TR+PL L  I   +  T     T T        + R+C
Sbjct: 311 FLMLPMQRVTRYPLLLYAILDRITTTDDRYKTATDALTSSNRVVRDC 357


>AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 218, isoform a protein.
          Length = 1136

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 336 FAVLPIQKITRHPLNLPIIQLILDLTGRSRATVTQGTCGFGTLERNC 476
           F +LP+Q++TR+PL L  I   +  T     T T        + R+C
Sbjct: 799 FLMLPMQRVTRYPLLLYAILDRITTTDDRYKTATDALTSSNRVVRDC 845


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,816,614
Number of Sequences: 27780
Number of extensions: 377956
Number of successful extensions: 1194
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)